3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.


Dendrogram of similar interfaces ?

matrix format
structure nameSALINIBACTER RUBER SINGLE-STRAND BINDING PROTEIN
(Single-stranded DNA-binding protein)
referenceRothweiler et al.
sourceSalinibacter ruber (strain DSM 13855 / M31) / Salinibacter ruber (strain DSM 13855 / M31)
experimentX-ray (resolution=2.60, R-factor=0.192)
structural superfamilyNucleic acid-binding proteins;
sequence familySinglestrand binding protein family;
multimeric complexes5odn_BC 5odn_EH
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  RT--NT--DTSTATNTQTTTWT------------------------------   L                       +----5odn_B    
                                                             +-------------------2 
  ----RTTTKTTT----FTATFTNT----------------------------   L   !                   ! +--6bhx_B    
                                                           --3                   +-1 
  RTKTNT----TTAT----TTWTRT----RTITYT--ET--RTWT--YTTT--   L   !                     +--6irq_A    
                                                             ! 
  ----------------------WTTTFT------MT--RTRTDTYT--RTRT   L   +------------------------6i52_C

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updated Sun Aug 3 09:49:56 2025