5omx_ABCDEFGH
citing 3d-footprint
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structure name
X-RAY STRUCTURE OF THE H2A-N38C NUCLEOSOME CORE PARTICLE
reference
Richmond et al. 'J. 430 45 2018
source
XENOPUS LAEVIS
experiment
X-ray (resolution=2.32, R-factor=?)
structural superfamily
Histone-fold;P-loop containing nucleoside triphosphate hydrolases;Chromo domain-like;Homeodomain-like;PH domain-like;lambda repressor-like DNA-binding domains;p53-like transcription factors;Nucleic acid-binding proteins;
reference complex
5o9g_E
5o9g_F
5o9g_G
5x0y_D
5z3u_A
6ftx_B
6g0l_M
6iro_A
6nqa_A
6pww_K
6r25_E
6r8y_H
6upk_H
6x0n_f
6yov_C
7at8_D
7eg6_A
7egp_S
7jzv_N
7nkx_a
7nkx_f
7otq_E
7u0g_M
7unc_a
7und_e
7vdt_B
7xcr_F
7xzx_N
7xzz_N
7zs9_e
8a3y_a
8aag_A
8atf_Q
8bvw_e
8byq_e
8ceo_r
8cww_A
8g57_E
8he5_a
8jh2_e
8jhf_A
8siy_G
8xgc_4
links to other resources
NAKB
PDIdb
DNAproDB
protein sequence
> 5omx_A interface=2,3,4,28,46, pHRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlaaihakrvtimpkdiqlarrirger > 5omx_B interface=22, dniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 5omx_C interface= aktrssraglqfpvgrvhrllRkgcyaervgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpk > 5omx_D interface= trkesyaiyvykvlkqvhpdtGisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak > 5omx_E interface=3,4,5,29,47, kpHRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlaaihakrvtimpkdiqlarrirgera > 5omx_F interface=29, rhrkvlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 5omx_G interface= trssraglqfpvgrvhrllrkgcyaervGagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpk > 5omx_H interface=4, rktRkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsa
3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.
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updated Tue Sep 10 08:01:26 2024