5onw_ABCDEFGH
citing 3d-footprint
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structure name
X-RAY CRYSTAL STRUCTURE OF A NUCLEOSOME CORE PARTICLE WITH ITS DNA SITE-SPECIFICALLY CROSSLINKED TO THE HISTONE OCTAMER AND THE TWO H2A/H2B DIMERS CROSSLINKED VIA H2A N38C
reference
Richmond et al. 'J. 430 45 2018
source
XENOPUS LAEVIS
experiment
X-ray (resolution=2.80, R-factor=?)
structural superfamily
Histone-fold;P-loop containing nucleoside triphosphate hydrolases;Chromo domain-like;Homeodomain-like;lambda repressor-like DNA-binding domains;p53-like transcription factors;
reference complex
5o9g_E
5o9g_F
5o9g_G
5x0y_D
5z3u_A
6a5l_e
6ftx_B
6g0l_M
6ir9_e
6iro_A
6nqa_A
6pww_K
6r25_E
6r8y_H
6yov_C
7at8_D
7eg6_A
7egp_S
7nkx_a
7nkx_f
7nky_e
7otq_E
7u0g_M
7unc_a
7und_e
7vdt_B
7xcr_F
7xsx_a
7xzx_N
7xzz_N
7zs9_e
8aag_A
8atf_Q
8bvw_e
8byq_e
8ceo_r
8cww_A
8g57_E
8he5_a
8siy_G
8t9f_F
links to other resources
NAKB
PDIdb
DNAproDB
protein sequence
> 5onw_A interface=3,45, hcYrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlaaihakrvtimpkdiqlarrirger > 5onw_B interface=8, niqgitkPairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 5onw_C interface= ktrssraGlqfpvgrvhrllrkgcyaervgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllp > 5onw_D interface=1, Rrktrkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsa > 5onw_E interface=3,27,45, hcYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlaaihakrvtimpkdiqlarrirge > 5onw_F interface=29, rhrkvlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 5onw_G interface= aktrssraglqfpvgrvhrllrkgcyaeRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpk > 5onw_H interface=1, Rkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsa
3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.
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updated Sat Dec 16 05:17:28 2023