3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

home
updated Thu Jun 25 10:54:08 2026

structure name	NUCLEOSOME CORE PARTICLE WITH AN ADDUCT OF A BINUCLEAR RAPTA (RU- ARENE-PHOSPHAADAMANTANE) COMPOUND HAVING AN ETHYLENEDIAMINE LINKER
reference	Adhireksan et al. 'Nat 8 1575 2017
source	XENOPUS LAEVIS
experiment	X-ray (resolution=2.63, R-factor=?)
structural superfamily	Histone-fold;P-loop containing nucleoside triphosphate hydrolases;Chromo domain-like;Homeodomain-like;lambda repressor-like DNA-binding domains;p53-like transcription factors;
reference complex	5o9g_F 5o9g_G 5z3o_E 5z3u_A 6g0l_M 6iro_A 6m4g_G 6r25_E 6r8y_H 6x0n_f 7at8_D 7nkx_f 7otq_E 7u0g_M 7vdt_B 7xzx_N 8cww_A 8g57_E 8siy_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5xf6_A interface=3,28,46, phRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirger > 5xf6_B interface=25, vlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 5xf6_C interface= aktrssraglqfpvgrvhrllrkgNyaervgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk > 5xf6_D interface=3, ktRkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak > 5xf6_E interface=3,28,46, phRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirger > 5xf6_F interface=30, krhrkvlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 5xf6_G interface=29, aktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk > 5xf6_H interface=3, ktRkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak