5xfp_B : 3D-footprint complex

structure name	BINARY COMPLEX OF PHF1 AND A DOUBLE STRANDED DNA (PHD finger protein 1)
reference	Wang et al. Nature 549 287 2017
source	Homo sapiens
experiment	X-ray (resolution=2.30, R-factor=0.211)
structural superfamily	FYVE/PHD zinc finger;Tudor/PWWP/MBT;
sequence family	PHDfinger;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5xfp_B interface=288,289, rlwegqdvlarwtdgllylgtikkvdsarevclvqfeddsqflvlwkdispaalpgeellccvcrsetvvpgnrlvscekcrhayhqdchvprapapswvcrqcvfaiatkrggalkkgpyaramlgmklslpyglkgldwdaghlsnrqqsycycggpgewnlkmlqcrsclqwfheactqclskpllygdrfyefeccvcrggpekvrrlqlrwvdvahlvlyhlsvcckkkyfdfdreilpftsenwdslllgelsdtpkgerssrllsalnshkdrfisgreiKKrkclfglharmpppve
interface signature	KK

Estimated binding specificities ?

readout + contact

# IC=2.922 IC/col=0.584 n_of_columns=5

specificity:

A |   8   7   3   7   2
C |  24   8  70   6   2
G |  48  73  20  80  82
T |  16   8   3   3  10

scan!

Dendrogram of similar interfaces ?

matrix format

  
  ------------KGKG   L   +-----------------------------5xfq_A    
                         ! 
  NASTRTHTSTLT----   L --3                             +4lg0_A    
                         !              +--------------1 
  NASTRGHTSTFT----   L   +--------------2              +1vtn_C    
                                        ! 
  NGSARGHGSC------   L                  +--------------6el8_A

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updated Mon Jun 29 21:39:59 2026