6b40_A : 3D-footprint complex

structure name	BBRAGL-3'TIR SYNAPTIC COMPLEX WITH NICKED DNA REFINED WITH C2 SYMMETRY (RAG1L,RAG1L)
source	BRANCHIOSTOMA BELCHERI
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6b40_A interface=379,381,384,423,488,491,492, scmtpeeclgmrldmlmtknqyskeynilkergfstlcppkqldaiektlmpgtaryslepdsvtmdfheyvpdfpcpntkgvrfpyahavaktleeledeivnglkklgrdpndptlvihtickdgadgmgdvsvhkeksdhllpdkalrfsfcvlrcsvmhkdtevtiyedpnpnsvrsnrpvlecigdenddgtvavcvgpiecqrllmkdkimrvhmsdgtqrahyltffnsmvdekwdrahgglagagskylctlceavrdealekagsykitrtlkkievtaskmkyesqekdtfgvkgypllttepwergidathtdinmgnyfkslivremaqvhswaktanvkkqivdaeskldkhlkeslglnptlmmAgNyaRelfkaehadklvalvdkpdrksalvevlakfrqlrkvyRanwplndmsdevrqykakavemandlkthfpyapctnylhkviehvqeliehpsgvgsvgalssEgnEAgnklfrqlrlgharkgntynglrdvlcthwlytsktlrdkaaxxxxxxxxxxxxxxxxxxx

No structural evidence for specific binding to DNA (<4 informative columns)

Dendrogram of similar interfaces ?

matrix format

  
  ----AC--IG--MCAGNGRA--RCRCKCRA------EGEGAT----                     +-6b40_A    
                                                            +--------2 
  ------LGIG--RTNGNGRG------PC--SCDC--EGEGSGKG--            !        ! +6dbj_A    
                                                       +----3        +-1 
  DTEC--LGIGMTRTNGNGRARC----PC--SCDC--EGEGSTKG--       !    !          +3jby_A    
                                                     --4    ! 
  ------LGIG--RTNTNGRA------PCRCSCEC--EGQGSGKG--       !    +----------6cg0_A    
                                                       ! 
  DT----LGIG--RTNGNARG----KCPC--SCECCCEGEGSTKGRT   L   +---------------5ze0_C

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updated Fri Sep 13 21:18:26 2024