5ze0_C : 3D-footprint complex

structure name	HAIRPIN FORMING COMPLEX, RAG1/2-NICKED(WITH DIDEOXY) 12RSS/23RSS COMPLEX IN MG2+ (MOUSE RAG1)
reference	Chuenchor et al. 'Mol. 70 358 2018
source	MUS MUSCULUS
experiment	X-ray (resolution=2.75, R-factor=0.201)
multimeric complexes	5ze0_CN 6cil_DN 6cim_DN
redundant complexes	5zdz_C 5ze1 6cik 6cil 6cim
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5ze0_C interface=59,466,468,471,575,579,582, hinkggrprqhllsltrraqkhrlrelkiqvkefadkeeggdvkavcltlfllalrarNehrqadeleaimqgrgsglqpavclairvntflscsqyhkmyrtvkaitgrqifqplhalrnaekvllpgyhpfewqpplknvssrtdvgiidglsglassvdeypvdtiakrfrydsalvsalmdmeedilegmrsqdlddylngpftvvvkescdgmgdvsekhgsgpavpekavrfsftvmritiehgsqnvkvfeepkpnselcckplclmladesdhetltailspliaereamksseltlemggiprtfkfifrgtgydeklvrevegleasgsvyictlcdttrleasqnlvfhsitrshaenlqryevwrsnpyhesveelrdrvkgvsakpfietvpsidalhcdignaaefykifqleigevykhpnaskeerkrwqatldkhlrkrmnlkpimrmNgNfaRklmtqetvdavcelipseerhealrelmdlylkmkpvwrsscpakecpeslcqysfnsqrfaellstkfkyryegkitnyfhktlahvpeiierdgsigawasEgneSgnKlfrrfrkmnarqskcyemedvlkhhwlytskylqkfmnahn
interface signature	NNNRESK

Estimated binding specificities ?

readout + contact

# IC=4.250 IC/col=0.170 n_of_columns=25

specificity:

A |  96  12  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  12  24  24  60   0
C |   0  84  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  12  24  24  12   0
G |   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  12  24  24  12  96
T |   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  60  24  24  12   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  ------NGDT----LGIG------RTNGNARG----KCPC--SCECCCEGEGSTKGRT   L                              +-5ze0_C    
                                                                                     +--------2 
  --------------LGIG------RTNGNGRG------PC--SCDC--EGEGSGKG--                         !        ! +6dbj_A    
                                                                                +----3        +-1 
  --------DTEC--LGIG----MTRTNGNGRARC----PC--SCDC--EGEGSTKG--                    !    !          +3jby_A    
                                                                             +--4    ! 
  --------------LGIG------RTNTNGRA------PCRCSCEC--EGQGSGKG--                 !  !    +----------6cg0_A    
                                                                   +---------5  ! 
  ------------ST----KTIGMTRANG------------------------------       !         !  +---------------6oer_A    
                                                                 --6         ! 
  ------------AC--IG------MCAGNGRA--RCRCKCRA------EGEGAT----       !         +------------------6b40_A    
                                                                   ! 
  RARAKT----------------------------------------------------       +----------------------------3gna_A

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updated Thu Dec 22 22:45:50 2022