3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

home
updated Tue Sep 10 13:20:29 2024

structure name	CLASS 3 : TRANSLOCATED NUCLEOSOME
source	XENOPUS LAEVIS
experiment	NMR
structural superfamily	Histone-fold;P-loop containing nucleoside triphosphate hydrolases;Chromo domain-like;Homeodomain-like;PH domain-like;lambda repressor-like DNA-binding domains;p53-like transcription factors;Nucleic acid-binding proteins;
reference complex	5o9g_F 5o9g_G 6fq8_A 6fq8_D 6ftx_B 6g0l_M 6r8y_H 6upk_H 6x0n_f 7jzv_N 7nkx_f 7u0g_M 7vdt_B 7xcr_F 7xzx_N 7xzz_N 8xgc_4
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6fq8_A interface=3,5, phRyRpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirg > 6fq8_B interface= rhRkVlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygf > 6fq8_C interface=30, kaktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllp > 6fq8_D interface= syaiyvykvlkqvhpdtgisskamsimnsFvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsa > 6fq8_E interface=3, ryRpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirg > 6fq8_F interface= kvLrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 6fq8_G interface=6,31, akaktRssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllp > 6fq8_H interface= syaiyVykvlkqvhpdtgisskamsimnsfVndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsa