3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF YEAST CDC13 AND SSDNA
(KLLA0F20922P)
referenceLei et al. Nat.Struct.Mol.Biol. 27 752 2020
sourceKLUYVEROMYCES LACTIS
experimentX-ray (resolution=2.50, R-factor=0.204)
structural superfamilyNucleic acid-binding proteins;
sequence familyCDC13, ssDNA binding;
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  FGFGATKTKTFTYT--------NTYT--YADGFGSGFGRGET--HALTYTNTRT--------ITMTDTKTNGRGKTQGFGKANTVTLT--------EALATGRT--FGDGNGTGYGQGRT----   L       +------------------------6lbr_A    
                                                                                                                                     +---2 
  --------------KGWGYC--FA--MA------SGRG------RTIG------WGDG------------------------------------------------------------------   L   !   !        +---------------4hja_A    
                                                                                                                                   --3   +--------1 
  --------------------------------------------------------------------------------------------------------YG--------------NGHG       !            +---------------3u58_C    
                                                                                                                                     ! 
  ----------------KTTTAT--------------------FT--RTFT--------ITYT------------------RT------QTFTDTKT----------------------------   L   +----------------------------2vw9_A

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updated Fri Sep 13 22:32:25 2024