3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF YEAST CDC13 AND SSDNA
(KLLA0F20922P)
referenceLei et al. Nat.Struct.Mol.Biol. 27 752 2020
sourceKLUYVEROMYCES LACTIS
experimentX-ray (resolution=2.50, R-factor=0.204)
structural superfamilyNucleic acid-binding proteins;
sequence familyCDC13, ssDNA binding;
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  FGFGATKTKTFT----YT----------------NTYT--YADGFGSGFGRGET--HALTYT--NTRT----ITMTDTKT--NG--RGKTQGFGKANT--VTLT--------EALATGRTFGDGNGTGYGQGRT   L               +-----------------6lbr_A    
                                                                                                                                                 +---------1 
  ------------EGTGYGSGDGKGATFTSGVG--NGYTLGYG------YG------KG--YT------------------RGDGNG--KT--YG--NGAG--RT------------------------------   L   +-2         +-----------------1s40_A    
                                                                                                                                               ! ! 
  ----------------------------------------------------------LTFTRT----------------------------WT--QT--LT--------------------------------     --3 +---------------------------8aas_B    
                                                                                                                                               ! 
  ------------------KT----------TTAT--------------------FT--RTFT------ITYT----------------------RT--------QTFTDTKT----------------------   L   +----------------------------2vw9_A

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updated Mon Jun 29 23:55:14 2026