3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

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updated Thu Jul 31 00:35:48 2025

structure name	STRUCTURE OF LSD2/NPAC-LINKER/NUCLEOSOME CORE PARTICLE COMPLEX: CLASS 1, FREE NUCLESOME
reference	Subramaniam et al. 'Cell 27 387 2019
source	XENOPUS LAEVIS
experiment	X-ray (resolution=3.70, R-factor=?)
structural superfamily	Histone-fold;lambda repressor-like DNA-binding domains;p53-like transcription factors;Nucleic acid-binding proteins;P-loop containing nucleoside triphosphate hydrolases;
reference complex	5o9g_F 6a5l_g 6ftx_B 6r1t_D 6r8y_H 6x0n_f 7ktq_E 7nkx_f 7u0g_M 7vdt_B 7xcr_F 7xzx_N 7xzz_N 8xgc_4
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6r1t_A interface=47, kphryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera > 6r1t_B interface=30, krhrkvlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfg > 6r1t_C interface=30,65, kaktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktRiiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt > 6r1t_D interface= rrktrkesyaiyvykvlkqvhpdtgisskAmsimnsfvndvferiageasrlahynkrstitsrEiqtavrlllpgelakhavsegtkavtkytsa > 6r1t_E interface=4, kphRyrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirger > 6r1t_F interface=2,29, rHrkvlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 6r1t_G interface=33, trakaktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt > 6r1t_H interface= rktrkesyaiyvykvlkqvhpdtgisskamsiMnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsa