3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

home
updated Sat Dec 14 19:05:51 2024

structure name	STRUCTURE OF LSD2/NPAC-LINKER/NUCLEOSOME CORE PARTICLE COMPLEX: CLASS 1, FREE NUCLESOME
reference	Subramaniam et al. 'Cell 27 387 2019
source	XENOPUS LAEVIS
experiment	X-ray (resolution=3.70, R-factor=?)
structural superfamily	Histone-fold;lambda repressor-like DNA-binding domains;p53-like transcription factors;Nucleic acid-binding proteins;P-loop containing nucleoside triphosphate hydrolases;
reference complex	6ftx_B 6r1t_D 6r8y_H 6x0n_f 7ktq_E 7nkx_f 7u0g_M 7vdt_B 7xcr_F 7xzx_N 7xzz_N 8xgc_4
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6r1t_A interface=47, kphryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera > 6r1t_B interface=30, krhrkvlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfg > 6r1t_C interface=30,65, kaktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktRiiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt > 6r1t_D interface= rrktrkesyaiyvykvlkqvhpdtgisskAmsimnsfvndvferiageasrlahynkrstitsrEiqtavrlllpgelakhavsegtkavtkytsa > 6r1t_E interface=4, kphRyrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirger > 6r1t_F interface=2,29, rHrkvlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 6r1t_G interface=33, trakaktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt > 6r1t_H interface= rktrkesyaiyvykvlkqvhpdtgisskamsiMnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsa