6xgw_A : 3D-footprint complex

structure name	ISCTH4 TRANSPOSASE, PRE-REACTION COMPLEX, PRC
reference	Kosek et al. 'Embo 40 e105666 2021
experiment	X-ray (resolution=3.50, R-factor=0.252)
structural superfamily	Ribonuclease H-like;
sequence family	Transposase, Mutator family; MULE transposase domain;
multimeric complexes	6xg8_AB 6xgw_AB
redundant complexes	6xg8
reference complex	6xg8_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6xgw_A interface=54,64,66,69,86,88,100,102,121,122,137,138,139,142,357,358,360, iitpekkelirnliseynitsakdlqealkdllgdtiqnmleaeldehlgyekYesteeaksnYrNgyTsktlkssvgqveidipRdRnaefepkivprYkRdiseienkiiamyargmsTReineqiqeiygfevSAEmvSkitdkilpeieewqkrplgevypivfidaihfsvkndgivgkkavyivlaidiegqkdvigiyvgenesskfwlsvlndlknrgvkdililcadalsgikdainaafpnteyqrcivhqirntlkyvsdkdrkefardlkriytapnekagydqmlevsekwekkypaamkswksnwdvicpffkyseelrkimyttntieslnssyrrinksrTVfPgdqsllksiylatvkitskwtmryknwglilgqlqimfegr
interface signature	YYNTRRYRTRSAESTVP

Estimated binding specificities ?

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# IC=16.949 IC/col=0.807 n_of_columns=21

specificity:

A |   2   0   0  73  87  89  24  24  24   2   1  24   4  24   0   0   2  96  94  91   3
C |   2   0   0   9   9   3  24  24  24  15   0  24   4  24   2   0  13   0   0   0  89
G |   2  96   0  11   0   2  24  24  24  11  93  24   2  24   2  96   2   0   0   3   2
T |  90   0  96   3   0   2  24  24  24  68   2  24  86  24  92   0  79   0   2   2   2

scan!

Dendrogram of similar interfaces ?

matrix format

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updated Fri Sep 13 03:13:52 2024