3D-footprint cannot reliably estimate the specificity of 'beta and beta-prime subunits of DNA dependent RNA-polymerases', as these often contain single-stranded DNA molecules which accumulate many base contacts which distort the calculations.


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updated Wed Jan 7 04:46:09 2026
structure nameRNA POLYMERASE II-SPT4/5-NUCLEOSOME-FACT STRUCTURE
sourceXENOPUS LAEVIS / SACCHAROMYCES CEREVISIAE
experimentNMR
structural superfamilyHistone-fold;P-loop containing nucleoside triphosphate hydrolases;Chromo domain-like;Homeodomain-like;lambda repressor-like DNA-binding domains;beta and beta-prime subunits of DNA dependent RNA-polymerase;Leucine zipper domain;Zn2/Cys6 DNA-binding domain;p53-like transcription factors;
reference complex5o9g_E 5o9g_F 5o9g_G 5x0y_D 5z3u_A 6a5l_e 6g0l_M 6ir9_e 6iro_A 6nqa_A 6pww_K 6r25_E 6r8y_H 6x0n_f 6yov_C 7at8_D 7ea8_A 7eg6_A 7egp_S 7nkx_a 7nkx_f 7otq_E 7u0g_M 7uio_A 7unc_a 7und_e 7vdt_B 7xsx_a 7xzx_N 7zs9_e 8aag_A 8atf_Q 8bvw_e 8ceo_r 8cww_A 8g57_E 8he5_a 8jh2_e 8jhf_A 8siy_G
links to other resourcesNAKB PDBSum PDIdb DNAproDB