8byq_e : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	RNA POLYMERASE II PRE-INITIATION COMPLEX WITH THE PROXIMAL +1 NUCLEOSOME (PIC-NUC10W)
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	1aoi_ABCDEFGH 1eqz_ABCDEFGH 1f66_ABCDEFGH 1kx3_ABCDEFGH 1kx4_ABCDEFGH 1kx5_ABCDEFGH 1m18_ABCDEFGH 1m19_ABCDEFGH 1m1a_ABCDEFGH 1p34_ABCDEFGH 1p3a_ABCDEFGH 1p3b_ABCDEFGH 1p3f_ABCDEFGH 1p3g_ABCDEFGH 1p3i_ABCDEFGH 1p3k_ABCDEFGH 1p3l_ABCDEFGH 1p3m_ABCDEFGH 1p3o_ABCDEFGH 1p3p_ABCDEFGH 1s32_ABCDEFGH 1u35_ABCDEFGH 1zbb_ABCDEFGHabcdefgh 1zla_ABCDEFGH 2cv5_ABCDEFGH 2f8n_ABDEFGHK 2fj7_ABCDEFGH 2nqb_ABCDEFGH 2nzd_ABCDEFGH 2pyo_ABCDEFGH 3a6n_ABCDEFGH 3afa_ABCDEFGH 3av1_ABCDEFGH 3ayw_ABCDEFGH 3aze_ABCDEFGH 3azf_ABCDEFGH 3azg_ABCDEFGH 3azh_ABCDEFGH 3azi_ABCDEFGH 3azj_ABCDEFGH 3azk_ABCDEFGH 3azl_ABCDEFGH 3azm_ABCDEFGH 3azn_ABCDEFGH 3b6f_ABCDEFGH 3b6g_ABCDEFGH 3c1b_ABCDEFGH 3c1c_ABCDEFGH 3kuy_ABCDEFGH 3kxb_ABCDEFGH 3lel_ABCDEF 3lel_GH 3lel_KLMOPQR 3lja_ABCDEFGH 3lz0_ABCDEFGH 3lz1_ABCDEFGH 3mgp_ABCDEFGH 3mgq_ABCDEFGH 3mgr_ABCDEFGH 3mgs_ABCDEFGH 3mnn_ABCDEFGH 3mvd_ABCDEFGHKL 3o62_ABCDEFGH 3reh_ABCDEFGH 3rei_ABCDEFGH 3rej_ABCDEFGH 3rek_ABCDEFGH 3rel_ABCDEFGH 3tu4_ABCDEFGHKL 3ut9_ABCDEFGH 3uta_ABCDEFGH 3utb_ABCDEFGH 3w96_ABCDEFGH 3w97_ABCDEFGH 3w98_ABCDEFGH 3w99_ABCDEFGH 3wa9_ABCDEFGH 3waa_ABCDEFGH 3wkj_ABCDEFGH 3x1s_ABCDEFGH 3x1t_ABCDEFGH 3x1u_ABCDEFGH 3x1v_ABCDEFGH 4j8u_ABCDEFGH 4j8v_ABCDEFGH 4j8w_ABCDEFGH 4j8x_ABCDEFGH 4kgc_ABCDEFGH 4ld9_ABCDEFGH 4qlc_ABCDEFGHU 4r8p_ABCDEFGHL 4wu8_ABCDEFGH 4wu9_ABCDEFGH 4xuj_ABCDEFGH 4ym5_ABCDEFGH 4ym6_ABCDEFGH 5av5_ABCDEFGH 5av6_ABCDEFGH 5av8_ABCDEFGH 5av9_ABCDEFGH 5avb_ABCDEFGH 5avc_ABCDEFGH 5b0y_ABCDEFGH 5b0z_ABCDEFGH 5b1l_ABCDEFGH 5b1m_ABCDEFGH 5b24_ABCDEFGH 5b2i_ABCDEFGH 5b2j_ABCDEFGH 5b31_ABCDEFGH 5cp6_ABCDEFGH 5cpi_ABCDEFGH 5cpj_ABCDEFGH 5cpk_ABCDEFGH 5dnm_ABCDEFGH 5dnn_ABCDEFGH 5e5a_ABCDEFGH 5f99_ABCDEFGH 5gse_ABCDEFGHKLMNOP 5gsu_ABCDEFGH 5gt0_ABCDEFGH 5gt3_ABCDEFGH 5gtc_ABCDEFGH 5hq2_ABGH 5jrg_ABCDEFGH 5kgf_ABCDEFGH 5nl0_ABCDEFGHZ 5nl0_KLMN 5o9g_ABCDEFGHW 5omx_ABCDEFGH 5ong_ABCDEFGH 5onw_ABCDEFGH 5oxv_ABCDEFGHKLMNOPQR 5oy7_ABCDEFGHIJKLMNOPQRSTUVWXYZabcdef 5x0x_ABCDEFGHO 5x0y_ABCDEFGHO 5xf3_ABCDEFGH 5xf4_ABCDEFGH 5xf5_ABCDEFGH 5xf6_ABCDEFGH 5y0c_ABCDEFGH 5y0d_ABCDEFGH 5z30_ABCDEFGH 5z3l_ABCDEFGHO 5z3o_ABCDEFGHO 5z3u_ABCDEFGHO 5z3v_ABCDEFGHO 6dzt_ABCDEFGH 6esf_ABCDEFGH 6esg_ABCDEFGH 6esh_ABCDEFGH 6esi_ABCDEFGH 6g0l_ABCDEFGHMW 6hkt_0123ABCDEFGHKLMNOPQRUVWXYZabcdefghklmnopqruvwxyz 6iro_ABCDEFGHL 6j99_ABCDEFGH 6jou_ABCDEFGH 6jr0_ABCDEFGH 6jr1_ABCDEFGH 6jyl_ABCDEFGHK 6k1i_ABCDEFGH 6k1j_ABCDEFGH 6k1k_ABCDEFGH 6k1p_ABCDEFGHK 6kvd_ABCDEFGH 6l49_ABCDEFGHKLMNOPQRSTUVWXYZ 6l4a_ABCDEFGHKLMNOPQRSTUVWXYZ 6l9z_ABCDEFGHKLMNOPQRS 6la2_ACDEFGHKLMNQ 6la2_TUVWXabefgijkl 6la8_ABCDEFGHKLMNOPQRS 6la9_ABCDEFGHKLMNOPQRST 6lab_ABCDEFGH 6lab_KLMNOPQR 6lab_UV 6ler_ABCDEFGH 6ler_KLMNOPQR 6m3v_ABCDEFGHKLMNOPQR 6m44_ABCDEFGHKLMNOPQR 6m4d_ABCDEFGH 6m4g_ABCDEFGH 6m4h_ABCDEFGH 6ne3_ABCDEFGHW 6nj9_ABCDEFGH 6nn6_ABCDEFGH 6nog_ABCDEFGH 6nqa_ABCDEFGH 6nzo_ABCDEFGHS 6o96_ABCDEFGH 6om3_ABCDEFGH 6om3_LMNOPQRST 6pa7_ABCDEFGHKP 6pwe_ABCDEFGH 6pwf_ABCDEFGHK 6pww_AGHIJKLMN 6pwx_AGHIJKLMN 6px1_ABCDEFGH 6px3_ABCDEFGHS 6r0c_ABCDEFGH 6r1u_ABCDEFGHK 6r25_ABCDEFGHM 6r8y_ABCDEFGHL 6r8z_ABCDEFGHL 6r90_ABCDEFGHL 6r91_ABCDEFGHL 6r92_ABCDEFGHL 6r93_ABCDEFGH 6r94_ABCDEFGH 6ryr_ABCDEFGHW 6ryu_ABCDEFGHVW 6s01_ABCDEFGHK 6t79_ABCDEFGH 6t7a_ABCDEFGHK 6t7b_ABCDEFGHK 6t7c_ABCDEFGHKL 6t7d_ABCDEFGHK 6t90_ABCDEFGHKL 6t93_ABCDEFGH 6upk_ABCDEFGH 6upl_ABCDEFGHKL 6usj_ABCDEFGH 6usj_KLMNOPQR 6usj_UV 6v2k_ABCDEFGH 6vyp_ABCDEFGHKLMN 6vyp_abcdefghklmn 6wz5_ABCDEFGH 6wz9_ABCDEFGH 6x0n_ABCDEFGHO 6x0n_PR 6x0n_abcdefgh 6x59_ABCDEFGH 6x5a_ABCDEFGH 6xjd_ABCDEFGH 6yov_ABCDEFGHKL 6zhx_ABCDEFGH 6zhy_ABCDEF 7a08_bcdefghi 7at8_ADEFGHIJK 7bwd_ABCDEFGHLM 7c0m_ABCDEFGHKk 7c0m_abcdefgh 7cow_ABCDEFGHKLMNOPQRST 7cro_BCDEFGHM 7crp_BCDEFGHM 7crq_BCDEFGHLM 7crr_BCDEFGHM 7d1z_ABCDEFGH 7dbp_ABCDEFGHK 7e8d_ABCDEFGHK 7e8i_ABCDEFGH 7eg6_ABCDEFGH 7egp_AOPQRSTUV 7enn_ACDEFGHKL 7jo9_ABCDEFGH 7joa_ABCDEFGH 7jzv_NOPQnopq 7k5x_ABCDEFGHU 7k5y_ABCDEFGHU 7k60_ABCDEFGHU 7k61_ABCDEFGH 7k63_ABCDEFGHU 7kbd_ABCDEFGH 7kbe_ABCDEFGH 7kbf_ABCDEFGHK 7lya_ABCDEFGH 7lyb_ABCDEFGH 7lyc_ABCDEFGH 7m1x_ABCDEFGH 7nkx_ABEWabcdef 7nky_ABEOQabcdef 7nky_Zh 7nl0_ABCDEFGH 7oh9_ABCDEFGHKL 7oha_ABCDEFGHKL 7ohb_ABCDEFGHK 7ohc_ABCDEFGH 7otq_ABCDEFGHK 7pet_ABCDEFGHKLMNOPQRabcdefghklmnopqrsu 7peu_ABCDEFGHKLMNOPQRabcdefghu 7pev_ABCDEFGHKLMNOPQR 7pew_ABCDEFGH 7pex_abcdefghu 7pey_KLMNOPQR 7pez_eklmnopqs 7pf0_ABCDEFGHKLMNOPQRUabcdefghu 7pf2_ABCDEFGHKLMNOPQRU 7pf3_klmnopqrs 7pf4_KLMNOPQR 7pf5_abcdefghu 7pf6_ABCDEFGHU 7pfa_ABCDEFGHKLMNOPQRUabcdefghu 7pfc_ABCDEFGHKLMNOPQRU 7pfd_ABCDEFGHU 7pfe_abcdefghu 7pff_KLMNOPQR 7pft_ABCDEFGHKLMNOPQRSUabcdefghu 7pfu_ABCDEFGHKLMNOPQRSU 7pfv_ABCDEFGHU 7pfw_abcdefghu 7pfx_KLMNOPQRS 7scy_ABCDEFGHK 7scz_ABCDEFGHK 7swy_ABCDEFGH 7tan_ABCDEFGH 7tn2_ABCDEFGHW 7u0j_ABCDEFGH 7u50_ABCDEFGHK 7u51_ABCDEFGH 7u52_ABCDEFGH 7u53_ABCDEFGH 7unc_ABabcdefgh 7und_ABEZabdefgh 7v90_ABCDEFGH 7v96_ABCDEFGHKLMNOPQR 7v9c_ABCDEFGHKLMNOPQR 7v9j_ABCDEFGHKLMNOPQRSTUVWXYZ 7v9k_ABCDEFGHKLMNOPQRSTUVWXYZabcdefgh 7v9s_ABCDEFGHKLMNOPQRSTUVWXYZ 7va4_ABCDEFGHKLMNOPQRSTUVWXYZabcdefgh 7vdt_ABCDEFGHK 7vz4_ABCDEFGH 7w9v_ABCDEFGH 7x3v_ABCDEFGH 7x3x_ABCDEFGH 7x57_ABCDEFGH 7x58_ABCDEFGH 7xfc_ABCDEFGH 7xfi_ABCDEFGH 7xfl_ABCDEFGH 7xfn_ABCDEFGH 7xnp_ABCDEFGH 7xpx_ABCDEFGH 7xvl_ABCDEFGH 7xvl_KLMNOPQR 7xvl_UVWXYZab 7xvl_efghijkl 7xvm_ABCDEFGH 7xx5_ABCDEFGH 7xx5_KLMNOPQR 7xx6_AXY 7xx6_BCDEFGHo 7xx6_KLMNOPQR 7xx6_UVWZabp 7xx6_efghijkl 7xzx_ABCDEFGHKLMN 7xzy_ABCDEFGH 7xzz_ABCDEFGHKLMN 7y00_ABCDEFGH 7y5w_ABCDEFG 7y60_ABCDEFGH 7y61_ABCDEFGH 7yoz_ABCDEFGH 7zs9_257AMOQRUWXabcdefgh 7zsa_7ABMOQRUWXabcdefgh 7zsb_7ABMOQRUWXabcdefgh 8cze_ABCDEFGH 8dk5_ABCDEFGH 8du4_ABCDEFGH 8ett_ABCDEF 8etv_ABCDEF 8eu2_KLMNOP 8eue_ABCDEFHK 8euj_HMOabfhk 8evg_ABCDEFGH 8g57_ABCDEFGH 8g6g_ABCDEFGH 8g6h_ABCDEFGH 8g6q_ABCDEFGH 8g86_ABCDEFGH 8guk_ABCDEFGH 8hak_ABCDEFGH 8he5_Eh 8j6s_ABCDEFGH 8j6t_ABCDEFGH 8j91_ABCDEFGH 8j92_ABCDEFGH 8jbx_ABCDEFGH 8jcc_ABCDEFGH 8jcd_ABCDEFGH 8jh2_gh 8jhf_ABCDEFGH 8jhg_ABCDEFGH 8jl9_ABCDEFGH 8jla_ABCDEFGH 8jlb_ABCDEFGH 8jld_ABCDEFGH 8jnd_LNPQ 8jne_ABCDEFGH 8jne_KN 8jne_MQS 8ooa_MNOPQR 8oos_GMNOPQR 8ox0_ABCDEFGH 8pkj_ABCDEFGH 8pp6_ABCDEFGH 8pp7_ABCDEFGH 8siy_CDEFGHIJ 8smw_ABCDEFGH 8smx_ABCDEFGH 8smy_ABCDEFGH 8smz_ABCDEFGH 8sn0_ABCDEFGH 8sn1_ABCDEFGH 8sn2_ABCDEFGH 8sn6_ABCDEFGH 8sn7_ABCDEFGH 8sn9_ABCDEFGH 8sna_ABCDEFGH 8syp_ABCDEFGH 8t3t_ABCDEFGH 8t3w_ABCDEFGH 8t3y_ABCDEFGH 8t9f_ABCDEFGH 8t9h_ABCDEFGH 8thu_ABCDEFGH 8txw_ABCDEFGH 8txx_ABCDEFGH 8u13_ABCDEFGH 8u14_ABCDEFGH 8u5h_IJKMOQRS 8upf_ABCDEFGH 8ux1_ABCDEFGH 8vfx_ABCDEFGH 8whb_ABCDEFGH 8xbw_EF 8ybj_ABCDEFGH 8yti_ABCDEFGH 8yti_KLMNOPQR 8yti_UV 9b3p_ABCDEFGH 9fgq_ABCDEFGH 9fh9_ABCDEFGH
redundant complexes	1m1a_E 1p3l_A 1p3o_A 2pyo_A 3a6n_A 3azf_E 3azm_E 3c1b_A 3kxb_E 3lja_E 3lz1_A 3mgq_E 3mgs_A 3rel_A 3w97_E 4j8u_A 4j8v_A 4ld9_A 4wu9_A 5av5_A 5av6_A 5av8_A 5b1m_A 5b24_A 5b31_A 5cpi_E 5e5a_E 5onw_A 5x0x_A 5xf5_A 5y0c_A 5z30_E 5z3v_E 6jr0_A 6jyl_E 6la9_A 6m3v_O 6m44_O 6m4h_A 6nog_A 6r0c_A 6r1u_E 6r94_E 6s01_E 6t7b_E 6t7d_E 6usj_E 7c0m_a 7dbp_A 7e8i_A 7kbe_E 7kbf_A 7nl0_A 7ohc_A 7pfa_A 7u51_A 7va4_S 7x57_A 7xfc_E 7xfn_E 7xnp_A 7y5w_E 7y60_A 8dk5_A 8evj_E 8g6s_A 8j6t_C 8j90_E 8jlb_A 8jld_A 8jnd_Q 8jnf_P 8kcc_E 8of4_E 8oos_Q 8osk_A 8peo_A 8sn1_E 8sn3_E 8sn6_A 8sna_E 8svf_A 8syp_A 8thu_A 8txx_E 8xbw_E 8yti_A 1aoi 1eqz 1f66 1kx3 1kx4 1kx5 1m18 1m19 1p34 1p3a 1p3b 1p3f 1p3g 1p3i 1p3k 1p3m 1p3p 1s32 1u35 1zbb 1zla 2cv5 2f8n 2fj7 2nqb 2nzd 3afa 3av1 3ayw 3aze 3azg 3azh 3azi 3azj 3azk 3azl 3azn 3b6f 3b6g 3c1c 3kuy 3lel 3lz0 3mgp 3mgr 3mnn 3mvd 3o62 3reh 3rei 3rej 3rek 3tu4 3ut9 3uta 3utb 3w96 3w98 3w99 3wa9 3waa 3wkj 3x1s 3x1t 3x1u 3x1v 4j8w 4j8x 4kgc 4qlc 4r8p 4wu8 4xuj 4ym5 4ym6 5av9 5avb 5avc 5b0y 5b0z 5b1l 5b2i 5b2j 5cp6 5cpj 5cpk 5dnm 5dnn 5f99 5gse 5gsu 5gt0 5gt3 5gtc 5hq2 5jrg 5kgf 5nl0 5o9g 5omx 5ong 5oxv 5oy7 5x0y 5xf3 5xf4 5xf6 5y0d 5z3l 5z3o 5z3u 6dzt 6esf 6esg 6esh 6esi 6g0l 6hkt 6iro 6j99 6jou 6jr1 6k1i 6k1j 6k1k 6k1p 6kvd 6l49 6l4a 6l9z 6la2 6la8 6lab 6ler 6m4d 6m4g 6ne3 6nj9 6nn6 6nqa 6nzo 6o96 6om3 6pa7 6pwe 6pwf 6pww 6pwx 6px1 6px3 6r25 6r8y 6r8z 6r90 6r91 6r92 6r93 6ryr 6ryu 6t79 6t7a 6t7c 6t90 6t93 6upk 6upl 6v2k 6vyp 6wz5 6wz9 6x0n 6x59 6x5a 6xjd 6yov 6zhx 6zhy 7a08 7at8 7bwd 7cow 7cro 7crp 7crq 7crr 7d1z 7e8d 7eg6 7egp 7enn 7jo9 7joa 7jzv 7k5x 7k5y 7k60 7k61 7k63 7kbd 7lya 7lyb 7lyc 7m1x 7nkx 7nky 7oh9 7oha 7ohb 7otq 7pet 7peu 7pev 7pew 7pex 7pey 7pez 7pf0 7pf2 7pf3 7pf4 7pf5 7pf6 7pfc 7pfd 7pfe 7pff 7pft 7pfu 7pfv 7pfw 7pfx 7scy 7scz 7ssa 7swy 7tan 7tn2 7u0g 7u0i 7u0j 7u50 7u52 7u53 7unc 7und 7ux9 7v90 7v96 7v9c 7v9j 7v9k 7v9s 7vdt 7vz4 7w9v 7x3t 7x3v 7x3w 7x3x 7x58 7xfh 7xfi 7xfj 7xfl 7xfm 7xpx 7xvl 7xvm 7xx5 7xx6 7xzx 7xzy 7xzz 7y00 7y61 7yi1 7yi4 7yi5 7yoz 7zs9 7zsa 7zsb 8a3y 8aag 8atf 8b0a 8bvw 8bz1 8cbn 8cbq 8ceo 8cww 8cze 8du4 8ett 8etv 8eu2 8eue 8euj 8evg 8evh 8evi 8f86 8g57 8g6g 8g6h 8g6q 8g86 8g88 8g8b 8g8g 8gpn 8gui 8guj 8guk 8h0v 8h0w 8hag 8hah 8hai 8haj 8hak 8hal 8ham 8han 8he5 8hxz 8ihl 8ihm 8j6s 8j91 8j92 8jbx 8jcc 8jcd 8jh2 8jh3 8jh4 8jhf 8jhg 8jl9 8jla 8jne 8kcb 8ooa 8osj 8osl 8ots 8ox0 8ox1 8pc5 8pc6 8pep 8pki 8pkj 8pp6 8pp7 8siy 8smw 8smx 8smy 8smz 8sn0 8sn2 8sn4 8sn5 8sn7 8sn8 8sn9 8sps 8spu 8t3t 8t3w 8t3y 8t9f 8t9h 8txv 8txw 8u13 8u14 8u5h 8upf 8ux1 8v4y 8v6v 8v7l 8vfx 8vfy 8vfz 8vg0 8vg1 8vg2 8wh5 8wh8 8wh9 8wha 8whb 8xbt 8xbu 8ybj 8yv8 9b3p 9fgq 9fh9
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8byq_e interface=4,5,29,47, kphRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirger

  
  RG--------                                     +8jh2_e    
                                 +---------------2 
  RG--RT----              +------4               +8grq_A    
                          !      ! 
  RGLCRT----            +-6      +---------------8hr1_E    
                        ! ! 
  ------RA--          +-8 +----------------------6g0l_D    
                      ! ! 
  ----RG----          ! +------------------------8ox0_C    
                      ! 
  ----RA----       +--9                         +1zla_C    
                   !  !          +--------------3 
  ----RG----       !  ! +--------5              +5x0y_G    
                   !  ! !        ! 
  ----RG----       !  +-7        +---------------8jla_C    
                 -10    ! 
  ----RA--RA       !    !                        +6a5l_g    
                   !    +------------------------1 
  ----RG----       !                             +8txv_G    
                   !  
  ----RT----       +-----------------------------8u14_G

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updated Sun Aug 3 23:25:58 2025