7xq5_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF SCINO2P-SCINO4P BOUND PROMOTER DNA
reference	Khan et al. 'Int 23 ? 2022
experiment	X-ray (resolution=2.25, R-factor=0.215)
structural superfamily	HLH, helix-loop-helix DNA-binding domain;
sequence family	Helixloophelix DNAbinding domain;
multimeric complexes	7xq5_AB
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7xq5_B interface=11,15,18,19,43, ddpvkvrkwkHvqmEkiRRintkeaferliksvrtppkengkRipkhilltcvmndiksirsanealqhildd
interface signature	HERRR

Estimated binding specificities ?

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# IC=3.622 IC/col=0.453 n_of_columns=8

specificity:

A |   7   0  81  24   7  24  24  66
C |   7  96   8  24   7  24  24   7
G |  73   0   7  24  68  24  24  16
T |   9   0   0  24  14  24  24   7

scan!

Dendrogram of similar interfaces ?

matrix format

  
  RT----NTRGECRCQT           +-----------------------------2ypa_A    
                           +-1 
  ------NT--ETRCMT       +-2 +-----------------------------2ql2_D    
                         ! ! 
  NTRGEC--RC------     --3 +-----------------------------2ql2_A    
                         ! 
  NG--ECRGRC------   L   +-----------------------------6od3_F

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updated Tue Dec 19 23:44:17 2023