structure name | STRUCTURE OF THE SCL:E47:LMO2:LDB1 COMPLEX BOUND TO DNA (T-CELL ACUTE LYMPHOCYTIC LEUKEMIA PROTEIN 1) |
reference | Hoosdally et al. 'Cell 4 135 2013 |
source | HOMO SAPIENS |
experiment | X-ray (resolution=2.80, R-factor=0.226) |
structural superfamily | HLH, helix-loop-helix DNA-binding domain; |
sequence family | Helixloophelix DNAbinding domain; |
multimeric complexes | 2ypa_AB 2ypb_AB |
redundant complexes | 2ypb_A |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence |
No structural evidence for specific binding to DNA (<4 informative columns)
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: LDB1 | ||
CAGGTG | PubMed | 2ypa_AB(6.64e-03) |
CANNTG | PubMed | 2ypa_AB(6.64e-03), 2ypb_AB(1.02e-02) |
CAGCTG | PubMed | 2ypa_AB(6.64e-03) |
term: LMO2 | ||
CANNTG | PubMed | 2ypa_AB(6.64e-03), 2ypb_AB(1.02e-02) |
CAGGTG | PubMed | 2ypa_AB(6.64e-03) |
CAGATG | PubMed | 2ypa_AB(6.64e-03), 2ypb_AB(3.89e-05) |
CAGCTG | PubMed | 2ypa_AB(6.64e-03) |
Dendrogram of similar interfaces ?
matrix format--HGNT--ECRCRG L +----------------7d8t_A +------------1 --HGNTMTEARCRG +-2 +----------------1nlw_D ! ! --HG----ETRTRG --3 +-----------------------------5v0l_A ! NG--RG-------- L +-----------------------------6od3_F |
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updated Fri Sep 13 16:50:50 2024