8vxy_B : 3D-footprint complex

structure name	STRUCTURE OF HAMA(E138A,K140A)B-PLASMID DNA COMPLEX FROM THE ESCHERICHIA COLI HACHIMAN DEFENSE SYSTEM
experiment	NMR
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
sequence family	DEAD/DEAH box helicase; Helicase conserved Cterminal domain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vxy_B interface=539,540,542,582,707,710,711, mpatadeiieaikeasavgfrgrliargqarsviwrdgdlppdapefsallsqdlqgyayalidlglrlrelngddayariafeqagtalesaiakgkrdsrdtdfhfvmaaasyhlahlsaraysllamvgqddnfspieraltqlirrdlrtlrdnalgfrlrgdgsdvkiteilqarlnlpqdengdseseedilfdgldlaltdaymsaislyllavergesrllsraieklrislsicaqfnmlpqwwlnfitihllsdlwsdtfherlplvpvggdaaewpalrelfiallqrrpraeidlwpsqreaagrsvndnddlvvslptsagktriaelcilrclaggkrvvfitplralsaqteatlsrtfgplgktismlygsigvsgmdedairqrdivvatpekldfalrndpsiindvglfifdeghmigaderevryevqiqrllrrqdadtrrivclsailpdgeqlddfagwlrrdkpggpiknnwrptrlqfgeviwsapagrlnlsvgyeaawvsrfivsrqppfpSDnKelclatawrliedgqtvliycplrrsvepfaetivdlhqRgllpslfdaapdildtaislgeewlgahspilaclrlgvalhhgalptayrkeierllrdgvlkvtissptlaqglnlsataivmhslhrnrelikvsefrnvigragrayvdveglviypifdKvnKRqtnwhtltsdtgaremesgliqlvcvllirmhtrlggdlkalteyvtnnavawefpeimtespqerdiaqaiwekqlstldtailsllgendipddqietalddilqsslwqrslqryrdenerillksgllsrsryiwqrstaagrrgyflsgvglttglrldaiaakanqllidanaaimggdaeeaiaaitalaeevftfypfipdplpgdwrgilrswllgepmtnvantqasetlqfvenglvyrlpwameairvratangdligdtdttlddyelgfavaavetgtlsrssslliqagfssrlaaikvvtdttadfqsgqelrrwlnseevishtdnhdwptpetrvmwleflgslspkgsqvwsrhryngmvdwrdtpavigtplqlytvdgihhvladdgtplgsingrintnrrgllrvevddengramfdylgpddfist
interface signature	SDKRKKR

Estimated binding specificities ?

readout + contact

# IC=5.379 IC/col=0.598 n_of_columns=9

specificity:

A |  96  96  67  24  24  96  69  24  69
C |   0   0  11  24  24   0   9  24   9
G |   0   0   9  24  24   0   9  24   9
T |   0   0   9  24  24   0   9  24   9

scan!

Dendrogram of similar interfaces ?

matrix format

  
  ------SGWG--FARA--------IC------KC------   L                                     +-7aud_E    
                                                       +---------------------------1 
  --------------TAHA----------TATA--------   L       +-2                           +-3kqh_B    
                                                     ! ! 
  STSTRT--------RT--------ST--------STVTMT   L     +-3 +-----------------------------8w0a_C    
                                                   ! ! 
  --------------------TTIA--RG------------   L   +-4 +-----------------------------7oo3_b    
                                                 ! ! 
  ------------------SG--------------------     --5 +-----------------------------7amv_W    
                                                 ! 
  ----------DT----------------------------   L   +-----------------------------3upu_A

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updated Tue Jun 30 18:45:47 2026