8vxy_B : 3D-footprint complex

structure name	STRUCTURE OF HAMA(E138A,K140A)B-PLASMID DNA COMPLEX FROM THE ESCHERICHIA COLI HACHIMAN DEFENSE SYSTEM
experiment	NMR
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
sequence family	DEAD/DEAH box helicase; Helicase conserved Cterminal domain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vxy_B interface=539,540,542,582,707,710,711, mpatadeiieaikeasavgfrgrliargqarsviwrdgdlppdapefsallsqdlqgyayalidlglrlrelngddayariafeqagtalesaiakgkrdsrdtdfhfvmaaasyhlahlsaraysllamvgqddnfspieraltqlirrdlrtlrdnalgfrlrgdgsdvkiteilqarlnlpqdengdseseedilfdgldlaltdaymsaislyllavergesrllsraieklrislsicaqfnmlpqwwlnfitihllsdlwsdtfherlplvpvggdaaewpalrelfiallqrrpraeidlwpsqreaagrsvndnddlvvslptsagktriaelcilrclaggkrvvfitplralsaqteatlsrtfgplgktismlygsigvsgmdedairqrdivvatpekldfalrndpsiindvglfifdeghmigaderevryevqiqrllrrqdadtrrivclsailpdgeqlddfagwlrrdkpggpiknnwrptrlqfgeviwsapagrlnlsvgyeaawvsrfivsrqppfpSDnKelclatawrliedgqtvliycplrrsvepfaetivdlhqRgllpslfdaapdildtaislgeewlgahspilaclrlgvalhhgalptayrkeierllrdgvlkvtissptlaqglnlsataivmhslhrnrelikvsefrnvigragrayvdveglviypifdKvnKRqtnwhtltsdtgaremesgliqlvcvllirmhtrlggdlkalteyvtnnavawefpeimtespqerdiaqaiwekqlstldtailsllgendipddqietalddilqsslwqrslqryrdenerillksgllsrsryiwqrstaagrrgyflsgvglttglrldaiaakanqllidanaaimggdaeeaiaaitalaeevftfypfipdplpgdwrgilrswllgepmtnvantqasetlqfvenglvyrlpwameairvratangdligdtdttlddyelgfavaavetgtlsrssslliqagfssrlaaikvvtdttadfqsgqelrrwlnseevishtdnhdwptpetrvmwleflgslspkgsqvwsrhryngmvdwrdtpavigtplqlytvdgihhvladdgtplgsingrintnrrgllrvevddengramfdylgpddfist
interface signature	SDKRKKR

Estimated binding specificities ?

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# IC=5.807 IC/col=0.645 n_of_columns=9

specificity:

A |  13  24  13   0  24  24   0   0   0
C |  16  24  13   0  24  24   0   0   0
G |  13  24  13   0  24  24   0   0   0
T |  54  24  57  96  24  24  96  96  96

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updated Wed Dec 18 19:54:37 2024