structure name | STRUCTURE AND FUNCTION OF THE B/HLH/Z DOMAIN OF USF (PROTEIN UPSTREAM STIMULATORY FACTOR) |
reference | 'EMBO 13 180 1994 |
source | Homo sapiens |
experiment | X-ray (resolution=2.90, R-factor=?) |
structural superfamily | HLH, helix-loop-helix DNA-binding domain; |
sequence family | Helixloophelix DNAbinding domain; |
multimeric complexes | 1an4_AB |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | QVERRQ |
Estimated binding specificities ?
readout + contact |
A | 13 24 0 0 96 13 C | 16 24 0 96 0 54 G | 54 24 0 0 0 16 T | 13 24 96 0 0 13scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: USF | ||
CACGTG | PubMed | 1an4_AB(1.12e-07) |
CACATG | PubMed | 1an4_AB(1.42e-03) |
CACGTGAC | PubMed | 1an4_A(6.42e-03), 1an4_AB(7.20e-08) |
CATGTG | PubMed | 1an4_AB(1.42e-03) |
Dendrogram of similar interfaces ?
matrix formatRTECRGRC------ L +-----------------------------6od3_F +-1 --HGNT--ET--RG L +-2 +-----------------------------6g1l_A ! ! --HG--ITECRCRG L --3 +-----------------------------5nj8_D ! ----NT--ETRCMT +-----------------------------2ql2_D |
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updated Tue Dec 19 05:23:23 2023