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structure nameMOUSE GABP ALPHA/BETA DOMAIN BOUND TO DNA
(PROTEIN GA BINDING PROTEIN ALPHA)
referenceBatchelor et al. Science 279 1037 1998
sourceMUS MUSCULUS
experimentX-ray (resolution=2.15, R-factor=?)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyEtsdomain;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKRARY

Estimated binding specificities ?

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# IC=5.807 IC/col=0.968 n_of_columns=6 specificity:   
A |  13   0   0   0   0  16
C |  57   0   0  96  96  13
G |  13   0   0   0   0  54
T |  13  96  96   0   0  13
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: GABP
CCGGAAGTPubMed1awc_A(6.34e-03)
CAGGAAGTPubMed1awc_A(6.34e-03)
CGGAAPubMed1awc_A(3.54e-04)
ACTTCCGPubMed1awc_A(3.37e-03)
CCGGAAPubMed1awc_A(1.12e-03)
CGGAAAPubMed1awc_A(1.12e-03)
CACTTCCGPubMed1awc_A(6.34e-03)
GGAAGPubMed1awc_A(3.54e-04)
GAGGAAPubMed1awc_A(1.12e-03)

Dendrogram of similar interfaces ?

matrix format
  
  QCKTRGATRGNT--   L     +-----------------------------8smh_F    
                       +-2 
  ECKTRGATRGNT--   L   ! +-----------------------------1pue_E    
                     --3 
  DCKTRGSTRGYA--   L   !                            +4bnc_A    
                       +----------------------------1 
  DCKTRG--RGYAKA   L                                +5jvt_A

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updated Mon Jun 29 14:01:02 2026