8smh_F : 3D-footprint complex

structure name	CHIMERIC ETS-DOMAIN OF MURINE PU.1 HARBORING THE CORRESPONDING BETA- STRAND 3 (S3) RESIDUES FROM MURINE ETS-1 IN COMPLEX WITH D(AATAAGCGGAAGTGGG) (Transcription factor PU.1)
reference	Terrell et al. 'To ? ? ?
source	Mus musculus
experiment	X-ray (resolution=1.37, R-factor=0.145)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	Etsdomain;
redundant complexes	8smj_F 8sp1_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8smh_F interface=58,59,62,63,65,66, kirlyqflldllrsgdmkdsiwwvdkdkgtfqfsskhkealahrwgiqkgnrkkmtyQKmaRAlRNygktgiihktakkkltyqfsgevlgr
interface signature	QKRARN

Estimated binding specificities ?

readout + contact

# IC=4.113 IC/col=0.823 n_of_columns=5

specificity:

A |  24   0   0   0  12
C |  12   0  96  96  12
G |  12  12   0   0  60
T |  48  84   0   0  12

scan!

Dendrogram of similar interfaces ?

matrix format

  
  --DCKT--RGST--RGYC--------   L             +-----------------------------4uno_A    
                                           +-2 
  --DCKT--RG----RGYA--------   L           ! +-----------------------------3zp5_A    
                                         +-3 
  --------ATNT--CT----SC----   L         ! !               +-------------8hcm_A    
                                       +-4 +---------------1 
  --------------RG------NG--           ! !                 +-------------7dci_A    
                                     +-5 ! 
  ----KT--RGAT--RGYA--------   L     ! ! +-----------------------------4iri_A    
                                   +-6 ! 
  RT----------------------YG   L   ! ! +-----------------------------5vfx_A    
                                 --7 ! 
  ------DCST--RGHGNTST------   L   ! +-----------------------------7yzb_A    
                                   ! 
  ------NAST--RTHTNTSTLT----   L   +-----------------------------3co6_C

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updated Tue Jun 30 18:11:44 2026