| structure name | PU.1 ETS DOMAIN-DNA COMPLEX (PROTEIN TRANSCRIPTION FACTOR PU.1 TF PU.1) |
| reference | Kodandapani et al. |
| source | Mus musculus |
| experiment | X-ray (resolution=2.10, R-factor=0.225) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| sequence family | Etsdomain; |
| multimeric complexes | 8ek8_EF |
| reference complex | 8ee9_F |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | EKRARN |
Estimated binding specificities ?
| readout + contact |  |
A | 24 0 0 0 0 C | 12 24 96 96 72 G | 12 0 0 0 12 T | 48 72 0 0 12scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: PU.1 | ||
| GTGGGAA | PubMed | 1pue_E(1.20e-03) |
| CAGGAAC | PubMed | 1pue_E(7.03e-03) |
Dendrogram of similar interfaces ?
matrix format----ECKT--RGAT--RGNT-------- L +-1pue_E +---5 ----DCKT--RG----RGYA-------- L ! +-1dux_F +-------6 ------STVT------RGQTNT--MT-- L ! ! +5d5v_B +----9 +-----3 ------ST--------RTQT--KG---- ! ! +5d5w_B ! ! ------KT--RGAT--RGYT-------- L +-12 +-------------1awc_A ! ! ------KT--RGSA--RGQA------RA L ! ! +---------1yo5_C +---13 +--------8 ----------RTNT--STAT--RT---- ! ! +---------1t2k_B ! ! KTHG------------------------ ! +-------------------5hdn_C ! ------KT--RGAT--RGYA-------- L ! +4iri_A +--15 +---------------2 ------KT--RG----RAYA-------- L ! ! ! +6vge_A ! ! +---10 ----DCKT--RG----RGYA----KA-- L ! ! ! ! +5jvt_A ! ! ! +--------------4 ----DCKT--RGAT--RCYA-------- L ! ! ! +5e8i_D ! +--14 ----ECKT--RGAT--RGHT------RA L -16 ! +4mhg_A ! ! +----------------1 ------KT--RG----RGYA-------- L ! ! ! +3wts_C ! +--11 ----DCKT--RG----RGYA-------- L ! ! +---------3zp5_A ! +------7 ----------NT--RGCT--NGST---- L ! +---------1if1_B ! ----------------RG--NG------ +----------------------------7dci_A |
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updated Thu Sep 12 15:19:01 2024