4bnc_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF HUMAN ETV1 COMPLEXED WITH DNA (HUMAN ETV1)
reference	Arrowsmith et al. J.Biol.Chem. 290 13692 2015
source	HOMO SAPIENS
experiment	X-ray (resolution=2.90, R-factor=0.207)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	Etsdomain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4bnc_A interface=54,55,58,59,61,62, slqlwqflvallddpsnshfiawtgrgmefkliepeevarrwgiqknrpamnyDKlsRSlRYyyekgimqkvageryvykfvcdpealfsmafsd
interface signature	DKRSRY

Estimated binding specificities ?

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# IC=4.170 IC/col=0.695 n_of_columns=6

specificity:

A |  19   9   5   6   0   6
C |  45   9   3  78  96   6
G |  16   9   3   6   0  78
T |  16  69  85   6   0   6

scan!

Dendrogram of similar interfaces ?

matrix format

  
  DCKTRGST--RGYA----   L                           +4bnc_A    
                                   +---------------1 
  DCKTRG----RGYA--KA   L   +-------2               +5jvt_A    
                           !       ! 
  ECKTRGAT--RGNT----   L --3       +----------------1pue_E    
                           ! 
  ----NT--RGSTATRA--   L   +------------------------2o6g_G

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updated Mon Jun 29 17:39:30 2026