1hf0_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF OCT-1 BOUND TO DNA AS A DIMER (OCTAMER-BINDING TRANSCRIPTION FACTOR 1)
reference	Scholer et al. Mol.Cell 8 569 2001
source	HOMO SAPIENS
experiment	X-ray (resolution=2.70, R-factor=0.239)
structural superfamily	lambda repressor-like DNA-binding domains;Homeodomain-like;
sequence family	Pou domain Nterminal to homeobox domain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1hf0_B interface=22,38,39,40,43,44,71,74,116,119,120,123, leeleqfaktfkqrriklgftQgdvglamgklygndfSQTtiSRfealnlsfknmsklkpllekwlndaeRkkRtsietnirvaleksflenqkptseeitmiadqlnmekevirVwfSNrrQkekri
interface signature	QSQTSRRRVSNQ

Estimated binding specificities ?

readout + contact

# IC=8.768 IC/col=0.974 n_of_columns=9

specificity:

A |   0   0   6   0  96  70  89   8   6
C |   0   0  21  96   0  12   0  70   1
G |   0   0  12   0   0   6   6  12  89
T |  96  96  57   0   0   8   1   6   0

scan!

home
updated Mon Dec 16 17:53:36 2024