1j5n_A : 3D-footprint complex

structure name	SOLUTION STRUCTURE OF THE NON-SEQUENCE-SPECIFIC HMGB PROTEIN NHP6A IN COMPLEX WITH SRY DNA (NONHISTONE CHROMOSOMAL PROTEIN 6A)
source	SACCHAROMYCES CEREVISIAE
experiment	NMR
structural superfamily	HMG-box;
sequence family	HMG high mobility group box;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1j5n_A interface=3,10,11,13,23,26,28,29,48, mvTprepkkRTtRkkkdpnapkRalSaYMffanenrdivrsenpditFgqvgkklgekwkaltpeekqpyeakaqadkkryesekelynatla
interface signature	TRTRRSYMF

Estimated binding specificities ?

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# IC=7.552 IC/col=1.079 n_of_columns=7

specificity:

A |  96  76   0  96  96   0  20
C |   0   0  96   0   0   0  38
G |   0  20   0   0   0   0  19
T |   0   0   0   0   0  96  19

scan!

Dendrogram of similar interfaces ?

matrix format

  
  KCRC--YTMALTRA--VCTG--AAVCEC   L               +1qrv_A    
                                     +-----------2 
  --RC--FAFTCG----IC--VGAG----   L   !           +2gzk_A    
                                   --3 
  --RCNTFTMA--RAHGNT----SA----   L   !            +3f27_D    
                                     +------------1 
  --RGNTFTMA--RT--NGRT--SA----   L                +7m5w_A

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updated Fri Sep 13 15:41:18 2024