7m5w_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE HMG-C1 DOMAIN OF HUMAN CAPICUA BOUND TO DNA (PROTEIN CAPICUA HOMOLOG)
reference	Dowling et al. Biorxiv ? ? 2022
source	HOMO SAPIENS
experiment	X-ray (resolution=2.95, R-factor=0.211)
structural superfamily	HMG-box;
sequence family	HMG high mobility group box;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7m5w_A interface=5,8,10,11,18,30,31,34,72,74,125,128,129,132, dhirRpmNaFMifskrhRalvhqrhpnqdNRtvSkilgewwyalgpkekqkyhdlafqvkeahfkahpdwkWcNpysslrrtldqrralvmqlfqdhgffpsaqataafqaryadifpskvclqLkiREvrQkimqaa
interface signature	RNFMRNRSWNLREQ

Estimated binding specificities ?

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# IC=6.915 IC/col=0.988 n_of_columns=7

specificity:

A |  12   0  96  96   0   0  60
C |  12  12   0   0   0   0  12
G |  12  84   0   0   0  96  12
T |  60   0   0   0  96   0  12

scan!

Dendrogram of similar interfaces ?

matrix format

  
  RGNTFTMA--RT--NGRT--SA------------WANTLARTETQT   L         +--------------7m5w_A    
                                                       +-----3 
  RCNTFTMA--RAHGNT----SA------------YA----------   L   !     !              +3f27_D    
                                                       !     +--------------1 
  RCNAFTIA--RG--NC----SA--LT----YAKT------------   L --4                    +2gzk_A    
                                                       ! 
  RC--YTMALTRA--VCTG--AA----VCEC----------------   L   !          +---------1qrv_A    
                                                       +----------2 
  ----YA------------FT--SG----------------------                  +---------5ze0_N

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updated Tue Dec 19 19:02:04 2023