| structure name | STRUCTURE OF SOX17 BOUND TO DNA (Transcription factor SOX-17) |
| reference | Palasingam et al. J.Mol.Biol. 388 619 2009 |
| source | Mus musculus |
| experiment | X-ray (resolution=2.75, R-factor=0.243) |
| structural superfamily | HMG-box; |
| sequence family | HMG high mobility group box; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RNFMRHNSY |
Estimated binding specificities ?
| readout + contact |  |
A | 19 76 0 0 0 0 C | 20 1 0 0 0 0 G | 19 19 0 0 96 0 T | 38 0 96 96 0 96scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: SOX17 | ||
| CACAATG | PubMed | 3f27_D(7.85e-06) |
| CCAAT | PubMed | 3f27_D(4.30e-04) |
Dendrogram of similar interfaces ?
matrix formatRCNGFTMARTHTNG--ST--YA-- L +-----------------------------6t90_L +-4 RTNGFTIARA--NASGST--YAPG L ! +-----------------------------1j46_A ! RTNTFTMARA--NGACST--YA-- L --5 +4s2q_D ! +--------1 RCNAFTIARG--NC--SALTYAKT L ! +----------2 +2gzk_A ! ! ! RGNTFTMART--NGRTSA--WANT L +---------3 +--------7m5w_A ! RCNTFTMARAHGNAACST------ L +-------------------4euw_A |
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updated Sun Aug 3 06:49:50 2025