1oct_C : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE OCT-1 POU DOMAIN BOUND TO AN OCTAMER SITE: DNA RECOGNITION WITH TETHERED DNA-BINDING MODULES
reference	Klemm et al. 'Cell(Cambridge,Mass.)' 77 21 1994
experiment	X-ray (resolution=3.00, R-factor=0.237)
structural superfamily	lambda repressor-like DNA-binding domains;Homeodomain-like;
sequence family	Pou domain Nterminal to homeobox domain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1oct_C interface=39,40,41,44,45,51,72,75,117,120,121, dleeleqfaktfkqrriklgftqgdvglamgklygndfSQTtiSRfealnLsfknmcklkpllekwlndaeRkkRtsietnirvaleksflenqkptseeitmiadqlnmekevirVwfCNrrqkekrinp
interface signature	SQTSRLRRVCN

Estimated binding specificities ?

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# IC=8.172 IC/col=0.908 n_of_columns=9

specificity:

A |  10  96   0   5   0  86  64  22   0
C |   0   0  10   0  96   0  11  64   0
G |   6   0  12  81   0   0   5   5   0
T |  80   0  74  10   0  10  16   5  96

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updated Mon Dec 16 18:18:48 2024