| structure name | ANALYSIS OF THE 2.0A CRYSTAL STRUCTURE OF THE PROTEIN-DNA COMPLEX OF HUMAN PDEF ETS DOMAIN BOUND TO THE PROSTATE SPECIFIC ANTIGEN REGULATORY SITE (SAM pointed domain containing ets transcription factor) |
| reference | Balderman et al. Biochemistry 44 7095 2005 |
| source | Homo sapiens |
| experiment | X-ray (resolution=2.00, R-factor=0.205) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| sequence family | Etsdomain; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | KRSRQR |
Estimated binding specificities ?
| readout + contact |  |
A | 74 0 0 64 64 C | 10 0 0 10 10 G | 10 96 96 12 12 T | 2 0 0 10 10scan! |
Dendrogram of similar interfaces ?
matrix format--------KT--RGAT--RGYA-------- L +---------4iri_A +------------------2 --------------NT--CT--NGST---- L ! +---------1if1_B ! ------DCKT--RG----RGYA-------- L ! +1dux_F ! +---------------1 ------ECKT--RGAT--RGNT-------- L ! +----3 +1pue_E --9 ! ! --------STVT------RGQTNTMT---- L ! +--4 +----------------5d5v_B ! ! ! --------ST--------RTQT--KG---- ! +-6 +---------------------5d5w_B ! ! ! ----------RTNT--RGSTAT--RT---- ! +-7 +------------------------1t2k_B ! ! ! --KTHG------------------------ +-8 +--------------------------5hdn_C ! --------------------------KGKG L ! +-----------------------5xfp_B +---5 RG------------------------YG-- L +-----------------------6lui_A |
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updated Fri Sep 13 16:08:21 2024