| structure name | CRYSTAL STRUCTURE OF THE DNA BINDING ETS DOMAIN OF THE HUMAN PROTEIN FEV IN COMPLEX WITH DNA (PROTEIN FEV) |
| reference | Burgess-Brown et al. J.Biol.Chem. 290 13692 2015 |
| source | HOMO SAPIENS |
| experiment | X-ray (resolution=2.00, R-factor=0.212) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| sequence family | Etsdomain; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | SDKRRY |
Estimated binding specificities ?
| readout + contact |  |
A | 8 16 12 1 1 20 C | 31 20 9 90 94 4 G | 14 28 13 3 1 67 T | 43 32 62 2 0 5scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: ETS CRYSTAL STRUCTURE OF THE DNA BINDING ETS DOMAIN OF THE HUMAN PROTEIN FEV IN COMPLEX WITH DNA mining | ||
| ACGGAAGT | PubMed | 3zp5_A(7.29e-03) |
| ACTTCCG | PubMed | 3zp5_A(3.91e-03) |
| CCGGAA | PubMed | 3zp5_A(1.33e-03) |
| CCGGAAGT | PubMed | 3zp5_A(7.29e-03) |
| CGGAA | PubMed | 3zp5_A(4.30e-04) |
| GCCGGAA | PubMed | 3zp5_A(3.91e-03) |
| GCGGAA | PubMed | 3zp5_A(1.33e-03) |
| GGCGGAAGT | PubMed | 3zp5_A(1.16e-02) |
Dendrogram of similar interfaces ?
matrix format------DCKT--RG----RGYA----KA---- L +-----------------------------5jvt_A ! ------DCKT--RGST--RGYA---------- L +-5 +--4bnc_A ! ! +------------------1 ------ECKT--RGAT--RGNT---------- L ! +-------3 +--1pue_E +-6 ! ----------RGNT--RGSTAT--RA------ L ! ! +---------------------2o6g_G ! ! ------QCKT--RGAT--RGNT---------- L +-7 +-----------------------------8smh_F ! ! --KTHG-------------------------- ! ! +--------5hdn_C ! ! +------------2 ------NCTTNA------VTNT---------- L --8 +-------4 +--------1pp7_U ! ! TT----KATTQTTG----LTRT----KAFTYT L ! +---------------------2p7c_B ! ----------NAST--RGHT--STFT------ L +-----------------------------1vtn_C |
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updated Mon Jun 29 17:32:24 2026