1yrn_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE MATA1/MATALPHA2 HOMEODOMAIN HETERODIMER BOUND TO DNA (PROTEIN MAT A1 HOMEODOMAIN)
reference	Johnson et al.
source	SACCHAROMYCES CEREVISIAE
experiment	X-ray (resolution=2.50, R-factor=0.225)
structural superfamily	Homeodomain-like;
sequence family	Homeobox domain;
redundant complexes	1akh
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1yrn_A interface=39,40,43,44,47,48, ispqarafleqvfrrkqslnskekeevakkcgitplqvRVwfINkrMRs
interface signature	RVINMR

Estimated binding specificities ?

contact

# IC=4.756 IC/col=0.594 n_of_columns=8

specificity:

A |  16  12  24   4  24   0   0  84
C |   4  23  24  83  24   0  96   4
G |  22  16  24   4  24   0   0   4
T |  54  45  24   5  24  96   0   4

scan!

Dendrogram of similar interfaces ?

matrix format

  
  ITQCNAMC--   L           +------2r5y_A    
                   +-------2 
  IAQTNA----   L   !       ! +----6es3_K    
                 --3       +-1 
  ICQTNA----   L   !         +----5edn_J    
                   ! 
  --KC--YCFA       +--------------6p5a_B

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updated Mon Dec 16 19:07:47 2024