| structure name | STRUCTURE OF PARB BOUND TO DNA (Plasmid Partition par B protein) |
| reference | Schumacher et al. Nature 438 516 2005 |
| source | Enterobacteria phage P1 |
| experiment | X-ray (resolution=2.98, R-factor=0.248) |
| structural superfamily | KorB DNA-binding domain-like; |
| sequence family | ParB family; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | SQATR |
Estimated binding specificities ?
| contact |  |
A | 0 0 96 54 54 C | 0 0 0 13 13 G | 0 96 0 13 13 T | 96 0 0 16 16scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: PARB | ||
| TTTAAG | PubMed | 1zx4_A(2.64e-03) |
| TGATA | PubMed | 1zx4_A(1.19e-03) |
| GTTTCACGTGAAAC | PubMed | 1zx4_A(2.10e-05) |
Dendrogram of similar interfaces ?
matrix format--SGQAAT--TTRG------ L +-----------1zx4_A ! --SGRAAT--TTRG------ L +-4 +3vwb_A ! ! +-1 STSTRGKGIG--RG--RT-- L ! +-----------2 +3mkz_A --5 ! STSTRGKGIG--RG--RG-- L ! +3mkw_B ! STSTRGKGIT--RG--RG-- L ! +---3mky_B +---------3 ----QASATAATNTRTRGRG L +---6y93_B |
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updated Tue Dec 17 22:35:47 2024