interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of 'DNA polymerase beta, N-terminal domain-like', as these often contain single-stranded DNA molecules which accumulate many base contacts which distort the calculations.


Dendrogram of similar interfaces ?

matrix format
structure nameDNA POLYMERASE LAMBDA IN COMPLEX WITH A DNA DUPLEX CONTAINING AN UNPAIRED DTMP
(DNA polymerase lambda)
referenceGarcia-Diaz et al. 'Cell(Cambridge,Mass.)' 124 331 2006
sourceHomo sapiens
experimentX-ray (resolution=1.65, R-factor=0.206)
structural superfamilyNucleotidyltransferase;DNA polymerase beta, N-terminal domain-like;DNA polymerase beta-like, second domain;
sequence familyFingers domain of DNA polymerase lamb;
multimeric complexes1rzt_EI 1xsl_EI 5iio_EI
redundant complexes1rzt_E 1xsl_I 1xsp_A 2bcr_A 2bcs_A 2bcu_A 2gws_I 2pfq_A 4xq8_B 4xrh_B 5ca7_B 5chg_A 5cj7_A 5cp2_B 5cr0_A 5ddm_B 5iik_A 5iil_A 5iim_A 5iio_E 7m08_A 7m0a_A 7m0b_A 7m0c_A 7m0d_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  WC--LC----KA--YCAGNGRCRGEGKTPT                                 +-2bcq_A    
                                                   +-------------1 
  ----LC--RCRAFT--KTQTRART------              +----2             +-6wie_A    
                                              !    ! 
  --SALTAART------RGEGRGRG------           +--3    +---------------4qz9_A    
                                           !  ! 
  HCKG--AG--KG--YG----KARA------         +-4  +--------------------5wo0_A    
                                         ! ! 
  --SALTAART------RGEGRGRG------       +-5 +-----------------------6go6_A    
                                       ! ! 
  ----------KC----KA--VARA------     --6 +-------------------------4p4m_A    
                                       ! 
  ----------KT--HCVGLCIGRG------       +---------------------------5hrb_A

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updated Tue Dec 19 06:22:07 2023