2ld5_A : 3D-footprint complex

structure name	SOLUTION NMR-DERIVED COMPLEX STRUCTURE OF HOXA13 DNA BINDING DOMAIN BOUND TO DNA (HOMEOBOX PROTEIN HOX-A13)
source	MUS MUSCULUS
experiment	NMR
structural superfamily	Homeodomain-like;
sequence family	Homeobox domain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2ld5_A interface=4,5,43,44,47,50,51,54,55,58, grkKRvpytkvqlkelereyatnkfitkdkrrrisattnlseRQvtIwfQNrrVKekKvinklktts
interface signature	KRRQIQNVKK

Estimated binding specificities ?

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# IC=8.223 IC/col=0.914 n_of_columns=9

specificity:

A |  67  11   4   0   0  96   0   0  14
C |  19   4   4   0   0   0   0   4   9
G |  10   9  24   0   0   0   0  11   6
T |   0  72  64  96  96   0  96  81  67

scan!

Dendrogram of similar interfaces ?

matrix format

  
  --YAQTNAAARG--   L                               +---6wig_A    
                         +-------------------------1 
  --NCITNARGRG--   L   +-2                         +---6fqq_E    
                       ! ! 
  RTNCICNARGRG--   L --3 +-----------------------------6fqp_B    
                       ! 
  ----YANC--NAKG   L   +-----------------------------4j19_B

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updated Mon Jun 29 15:21:30 2026