| structure name | SOLUTION NMR-DERIVED COMPLEX STRUCTURE OF HOXA13 DNA BINDING DOMAIN BOUND TO DNA (HOMEOBOX PROTEIN HOX-A13) |
| source | MUS MUSCULUS |
| experiment | NMR |
| structural superfamily | Homeodomain-like; |
| sequence family | Homeobox domain; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | KRRQIQNVKK |
Estimated binding specificities ?
| readout + contact |  |
A | 82 89 96 0 96 96 63 68 9 C | 1 0 0 0 0 0 27 16 13 G | 0 7 0 0 0 0 6 6 6 T | 13 0 0 96 0 0 0 6 68scan! |
Dendrogram of similar interfaces ?
matrix format----------YAQTNAAARG-- L +-----------------------------6wig_A ! ----------IAQCNAYA--RT L ! +1nk2_P ! +----------------2 ----------NT--NAITRG-- ! +------6 +5zjt_B ! ! ! --------RCVACTNAQA---- L +-9 ! +-----------------7xrc_C ! ! ! ----------VAQTNA------ L ! ! ! +5hod_A ! ! +---7 +--------------3 RA------RCVTCTNAQTRC-- L ! ! ! ! ! +1au7_A ! ! ! ! +-4 ----------ITQCNAACRG-- L ! ! ! ! ! ! +6a8r_A -10 +-8 +------5 +--------------1 --RT------NCSTNARG---- L ! ! ! +1mnm_C ! ! ! --------RTVAITNAMCRG-- L ! ! +-----------------1yrn_A ! ! ----TGKG-------------- L ! +----------------------------4pxi_B ! ----------VAQTNA------ L +-----------------------------1fjl_B |
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updated Fri Sep 13 16:28:58 2024