2qhb_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF NGTRF COMPLEXED WITH TELOMERIC DNA (Telomere binding protein TBP1)
reference	Byun et al. 'To ? ? ?
source	Nicotiana glutinosa
experiment	X-ray (resolution=2.40, R-factor=?)
structural superfamily	Homeodomain-like;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2qhb_A interface=43,44,47,48,51, rrirrpfsvaevealveavehlgtgrwrdvkmrafdnadhrtYVdlKDkwKtlvhtasiapqqrrgepvpqdlldrvlaahaywsq
interface signature	YVKDK

Estimated binding specificities ?

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# IC=5.379 IC/col=0.896 n_of_columns=6

specificity:

A |   9   9  69   0   0   0
C |   9   9   9   0   0   0
G |  11   9   9  96  96  96
T |  67  69   9   0   0   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  RART------VTKG--KA--   L                                 +2lkx_A    
                                           +---------------1 
  --RA------IAQTNA----   L            +----2               +5ego_B    
                                      !    ! 
  --RT------NT--NAIA--   L         +--3    +---------------1b72_B    
                                   !  ! 
  ----RT----NT--NAIARG   L   +-----4  +--------------------4cyc_B    
                             !     ! 
  --RT------IAQCNAMG--   L --5     +-----------------------1b72_A    
                             ! 
  ------RGDTVTSTRG----   L   +-----------------------------6lxn_A

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updated Sat Jan 10 05:32:44 2026