2qhb_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF NGTRF COMPLEXED WITH TELOMERIC DNA (Telomere binding protein TBP1)
reference	Byun et al. 'To ? ? ?
source	Nicotiana glutinosa
experiment	X-ray (resolution=2.40, R-factor=?)
structural superfamily	Homeodomain-like;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2qhb_A interface=43,44,47,48,51, rrirrpfsvaevealveavehlgtgrwrdvkmrafdnadhrtYVdlKDkwKtlvhtasiapqqrrgepvpqdlldrvlaahaywsq
interface signature	YVKDK

Estimated binding specificities ?

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# IC=5.300 IC/col=0.883 n_of_columns=6

specificity:

A |   9   9  67   0   0   0
C |  11  11   9   0   0   0
G |   9   9  11  96  96  96
T |  67  67   9   0   0   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  RART------VTKG--KA--   L                                 +-2lkx_A    
                               +---------------------------1 
  ----RT----NT--NAIARG   L   +-2                           +-4cyc_B    
                             ! ! 
  --RT------IAQCNAMG--   L --3 +-----------------------------1b72_A    
                             ! 
  ------RGDTVTSTRG----   L   +-----------------------------6lxn_A

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updated Mon Jun 29 15:35:24 2026