| structure name | STRUCTURE OF A HOMEODOMAIN IN COMPLEX WITH DNA (Paired box protein Pax-3) |
| reference | Ladias et al. Biochemistry 48 1148 2009 |
| source | Homo sapiens |
| experiment | X-ray (resolution=1.95, R-factor=0.174) |
| structural superfamily | Homeodomain-like; |
| sequence family | Homeobox domain; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RRVSN |
Estimated binding specificities ?
| readout + contact |  |
A | 69 0 96 96 9 9 C | 9 0 0 0 9 67 G | 9 0 0 0 11 11 T | 9 96 0 0 67 9scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: PAX3 | ||
| TAATC | PubMed | 3cmy_A(1.23e-07) |
| TAATAN | PubMed | 3cmy_A(1.13e-03) |
Dendrogram of similar interfaces ?
matrix formatRARA--IAQTNA---- L +-5ego_B +--------------1 --RT--NT--NAIARG L ! +-1b72_B --3 RCRT--VTQTNA--RG L ! +---8ejp_B +------------2 ----RTNT--NAIARG L +---4cyc_B |
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updated Sat Jan 10 05:47:50 2026