structure name | THE 3D STRUCTURE OF THE HUMAN SRY-DNA COMPLEX SOLVED BY MULTID- DIMENSIONAL HETERONUCLEAR-EDITED AND-FILTERED NMR |
experiment | NMR |
structural superfamily | HMG-box; |
sequence family | HMG high mobility group box; |
redundant complexes | 1hrz_A 1j46_A 1j47_A |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | NFIRSSY |
Estimated binding specificities ?
readout + contact |
A | 13 16 0 0 0 0 C | 16 13 0 0 0 0 G | 54 13 0 0 96 0 T | 13 54 96 96 0 96scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: SRY | ||
AACAAT | PubMed | 1hry_A(1.12e-03), 1hrz_A(1.12e-03) |
AACAAAG | PubMed | 1hry_A(6.36e-06), 1hrz_A(6.24e-06) |
NACAAT | PubMed | 1hry_A(1.12e-03), 1hrz_A(1.12e-03) |
CTTTG | PubMed | 1hry_A(3.59e-04), 1hrz_A(3.54e-04) |
ACAAT | PubMed | 1hry_A(3.54e-04), 1hrz_A(3.54e-04) |
GAACAAT | PubMed | 1hry_A(3.37e-03), 1hrz_A(3.37e-03) |
ATTGTT | PubMed | 1hry_A(1.12e-03), 1hrz_A(1.12e-03) |
TCAAAG | PubMed | 1hry_A(1.13e-03), 1hrz_A(1.12e-03) |
Dendrogram of similar interfaces ?
matrix formatRTNGFTIARA--NASG--STYA L +-----------------------------1j47_A ! --NAFTIARC----SGICSTYA L --3 +1hry_A ! +---------------1 RTNGFTMART--NTAT--SAYA L +-------------2 +6t78_A ! RCNGFTMARTHTNG----STYA L +---------------6t90_L |
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updated Fri Sep 13 15:38:47 2024