structure name | STRUCTURE OF THE E. COLI ANTITOXIN MQSA (YGIT/B3021) IN COMPLEX WITH ITS GENE PROMOTER (Uncharacterized HTH-type transcriptional regulator ygiT) |
reference | Brown et al. J.Biol.Chem. 286 2285 2011 |
source | Escherichia coli |
experiment | X-ray (resolution=2.10, R-factor=0.181) |
structural superfamily | lambda repressor-like DNA-binding domains; |
multimeric complexes | 3o9x_AB |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | QVNSR |
Estimated binding specificities ?
readout + contact |
A | 0 0 0 12 60 C | 0 0 0 12 12 G | 84 96 0 12 12 T | 12 0 96 60 12scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: MQSA | ||
AACCT | PubMed | 3o9x_A(1.36e-04), 3o9x_AB(1.24e-02) |
AGGTT | PubMed | 3o9x_A(1.36e-04), 3o9x_AB(1.24e-02) |
Dendrogram of similar interfaces ?
matrix formatQT----VTNT--STRG------ L +-----------------3o9x_A --3 QT--STNTVTATSTQTRTETTT L ! +---2r1j_L +-------------2 --AT--QAAT--SA-------- ! +4z5h_A +--1 --STKCQAAT--SA-------- L +3dnv_B |
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updated Tue Dec 19 07:56:26 2023