| structure name | STRUCTURE OF THE SOX4 HMG DOMAIN BOUND TO DNA (Transcription factor SOX-4) |
| reference | Kolatkar et al. Biochem.J. 443 39 2012 |
| source | Mus musculus |
| experiment | X-ray (resolution=2.40, R-factor=0.238) |
| structural superfamily | HMG-box; |
| sequence family | HMG high mobility group box; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RNFMRHNASY |
Estimated binding specificities ?
| readout + contact |  |
A | 96 0 96 96 12 84 12 C | 0 96 0 0 0 12 12 G | 0 0 0 0 24 0 48 T | 0 0 0 0 60 0 24scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: SOX4 | ||
| CCAAT | PubMed | 3u2b_C(1.01e-03) |
Dendrogram of similar interfaces ?
matrix formatRTNGFTIARA--NASGST--YAPG L +-----------------------------1j46_A ! RTNTFTMARA--NGACST--YA-- L ! +4s2q_D ! +--------1 RCNAFTIARG--NC--SALTYAKT L --5 +----------2 +2gzk_A ! ! ! RGNTFTMART--NGRTSA--WANT L ! +--3 +--------7m5w_A ! ! ! RCNGFTMARTHTNG--ST--YA-- L +------4 +-------------------6t90_L ! RCNTFTMARAHGNAACST------ L +----------------------4euw_A |
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updated Fri Sep 13 17:45:08 2024