interface graph thumbnail
legend  pdf

structure nameE. COLI ISCR-DNA COMPLEX
(HTH-TYPE TRANSCRIPTIONAL REGULATOR ISCR)
referenceMacedo-Ribeiro et al. Proc.Natl.Acad.Sci.USA 111 E2251 2014
sourceESCHERICHIA COLI K-12
experimentX-ray (resolution=2.49, R-factor=0.209)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyTranscriptional regulator;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSSYEQRP

Estimated binding specificities ?

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# IC=10.822 IC/col=0.984 n_of_columns=11 specificity:   
A |   3  85  85  75  96   0  85  65   0  96   3
C |  85   3   3   3   0  96   3  13   0   0  85
G |   3   3   5   5   0   0   3   6   0   0   5
T |   5   5   3  13   0   0   5  12  96   0   3
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updated Mon Dec 16 22:56:55 2024