interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF ARAR(DBD) IN COMPLEX WITH OPERATOR ORA1
(Arabinose metabolism transcriptional repressor)
referenceNair et al. 'Nucleic 41 639 2013
sourceBacillus subtilis
experimentX-ray (resolution=2.30, R-factor=0.225)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyBacterial regulatory proteins, gntR family;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureESRHRQ

Estimated binding specificities ?

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# IC=4.980 IC/col=0.711 n_of_columns=7 specificity:   
A |   6   0  24  24  60   0  96
C |   6  96   6  24   6  96   0
G |  24   0  48  24  24   0   0
T |  60   0  18  24   6   0   0
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updated Mon Dec 16 23:12:40 2024