interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF ARAR(DBD) IN COMPLEX WITH OPERATOR ORA1
(Arabinose metabolism transcriptional repressor)
referenceNair et al. 'Nucleic 41 639 2013
sourceBacillus subtilis
experimentX-ray (resolution=2.30, R-factor=0.225)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyBacterial regulatory proteins, gntR family;
multimeric complexes4egy_AB 4egz_AB 4h0e_AB 5d4r_AB 5d4s_AB
reference complex4h0e_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureESRHRQ

Estimated binding specificities ?

readout + contactlogo
# IC=4.007 IC/col=0.572 n_of_columns=7 specificity:   
A |   0   0   9  24  24   9  67
C |   0   0   9  24  24  11  11
G |   0  96   9  24  24  67   9
T |  96   0  69  24  24   9   9
scan!

home
updated Thu Sep 12 19:10:34 2024