interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF BENM_DBD/CATB SITE 1 DNA COMPLEX
(HTH-type transcriptional regulator BenM)
referenceNeidle et al.
sourceAcinetobacter sp.
experimentX-ray (resolution=3.10, R-factor=0.179)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyBacterial regulatory helixturnhelix protei;
multimeric complexes4ihs_CD 4iht_AB 4iht_CD
reference complex4iht_D
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureAQPPRR

Estimated binding specificities ?

readout + contactlogo
# IC=7.580 IC/col=0.842 n_of_columns=9 specificity:   
A |  96   0   0  73   0   7  24  73  73
C |   0   0   0   9   0   7  24   7   9
G |   0  96   0   7   0  73  24   7   7
T |   0   0  96   7  96   9  24   9   7
scan!

home
updated Thu Sep 12 19:27:54 2024