interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF BENM_DBD/CATB SITE 1 DNA COMPLEX
(HTH-type transcriptional regulator BenM)
referenceNeidle et al.
sourceAcinetobacter sp.
experimentX-ray (resolution=3.10, R-factor=0.179)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyBacterial regulatory helixturnhelix protei;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureAQPPRR

Estimated binding specificities ?

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# IC=7.670 IC/col=0.852 n_of_columns=9 specificity:   
A |  96   0   0  73   0   7  24  75  75
C |   0   0   0   7   0   9  24   7   7
G |   0  96   0   7   0  73  24   7   7
T |   0   0  96   9  96   7  24   7   7
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updated Mon Dec 16 23:33:51 2024