| structure name | CRYSTAL STRUCTURE OF KLEBSIELLA PNEUMONIAE RSTA DNA-BINDING DOMAIN IN COMPLEX WITH RSTA BOX (DNA-binding transcriptional regulator RstA) |
| reference | Hsiao et al. 'Nucleic 42 8777 2014 |
| source | Klebsiella pneumoniae |
| experiment | X-ray (resolution=2.70, R-factor=0.222) |
| structural superfamily | C-terminal effector domain of the bipartite response regulators; |
| sequence family | Transcriptional regulatory protein, C ter; |
| multimeric complexes | 4nhj_AB |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RDVSRR |
Estimated binding specificities ?
| contact |  |
A | 0 0 6 96 0 96 0 13 0 C | 0 0 6 0 96 0 13 9 82 G | 0 96 6 0 0 0 15 13 8 T | 96 0 78 0 0 0 68 61 6scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: RSTA CRYSTAL STRUCTURE OF KLEBSIELLA PNEUMONIAE RSTA DNA-BINDING DOMAIN IN COMPLEX WITH RSTA BOX mining | ||
| AAAATTGTACA | PubMed | 4nhj_A(5.40e-06), 4nhj_AB(1.04e-02) |
| TACATNTNGTTACA | PubMed | 4nhj_AB(9.43e-06) |
| TGTACAATTTT | PubMed | 4nhj_A(5.40e-06), 4nhj_AB(1.04e-02) |
Dendrogram of similar interfaces ?
matrix format--------RG----DTVT--STRG--WT-- L +-------------------------6lxn_A ! --------RCTT----TTHTLA-------- L +--5 +-----------------------7e1b_B ! ! ! ------------------------RG---- ! +-4 +-4wcg_A ! ! +-------------1 --RA--ST--ECTT--RAKA------HT-- --6 +-------2 +-7oz3_B ! ! --ETNTSCRGHC----RT--------QA-- ! +---------------5d4s_B ! --------NTVC--ECSTYTSTYC--RA-- L ! +--------------------5ed4_A +-------3 QA--------------------------NG +--------------------7k63_U |
home
updated Fri Sep 13 18:32:56 2024