interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE UBDA MOTIF
referenceOrtiz-Lombardia et al. Structure 23 270 2015
experimentX-ray (resolution=2.55, R-factor=0.190)
structural superfamilyHomeodomain-like;
sequence familyHomeobox domain;
multimeric complexes1b8i_AB 4cyc_AB 4uus_AB 4uus_EF
reference complex4cyc_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRKIQNMK

Estimated binding specificities ?

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# IC=4.123 IC/col=0.687 n_of_columns=6 specificity:   
A |  11  11  96   0  24   9
C |   9   9   0   0  24   9
G |   9   0   0   0  24  59
T |  67  76   0  96  24  19
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updated Fri Jan 9 01:41:11 2026