| structure name | STRUCTURE OF SOX18-HMG/PROX1-DNA (Transcription factor SOX-18) |
| reference | Narasimhan et al. 'Nucleic 44 3922 2016 |
| source | Mus musculus |
| experiment | X-ray (resolution=1.75, R-factor=0.175) |
| structural superfamily | HMG-box; |
| sequence family | HMG high mobility group box; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RNFMRNSY |
Estimated binding specificities ?
| readout + contact |  |
A | 19 76 0 0 0 0 C | 38 0 0 0 0 0 G | 19 19 0 0 96 0 T | 20 1 96 96 0 96scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: PROX1 | ||
| CCAAT | PubMed | 4y60_C(4.51e-04) |
Dendrogram of similar interfaces ?
matrix formatRTNTFTMARANGAC--ST--YA L +4s2q_D +-1 --NAFTIARC--SGICST--YA L +--------2 +1hry_A ! ! RTSAYCMT--FT---------- L +------------------3 +-1j5n_A ! ! RTNTFTMARANASC--ST--YA L --4 +----------1o4x_B ! ----------------KTFC-- +-----------------------------8pk1_F |
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updated Mon Jun 29 18:59:54 2026