interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF ANABAENA TRANSCRIPTION FACTOR HETR COMPLEXED WITH 21-BP DNA FROM HETP PROMOTER
(Heterocyst differentiation control protein)
referenceJiang et al. 'Sci 5 16470 2015
sourceNostoc sp. PCC 7120
experimentX-ray (resolution=2.80, R-factor=0.206)
structural superfamilyPeriplasmic binding protein-like II;
sequence familyPeptidase family S48;
multimeric complexes4hri_AB 4yrv_AB
redundant complexes4hri_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureREK

Estimated binding specificities ?

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# IC=1.759 IC/col=0.251 n_of_columns=7 specificity:   
A |  19  13   9  22  22  14  78
C |  39  63  67  27  25  54   6
G |  19  10   9  25  22  14   6
T |  19  10  11  22  27  14   6
scan!

Dendrogram of similar interfaces ?

matrix format
  
  RGEC--KG------------------   L                                      +4yrv_B    
                                           +--------------------------1 
  RAEC--KG------------------   L         +-2                          +4izz_A    
                                         ! ! 
  ------------TT--RGCT--NGKG   L       +-3 +--------------------------7rh2_B    
                                       ! ! 
  ------------NASTRGHTNTSTLT   L     +-4 +---------------------------7fj2_B    
                                     ! ! 
  ------------TT--RTCT--NGKG   L   +-5 +---------------------------7oot_B    
                                   ! ! 
  ------------NASTRTHT--ST--     --6 +----------------------------3co7_C    
                                   ! 
  --SGRGPTSGRG--------------   L   +----------------------------7bhy_A    
                                 

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updated Tue Dec 19 09:48:47 2023