interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF ARAR(DBD) IN COMPLEX WITH OPERATOR ORE1
(Arabinose metabolism transcriptional repressor)
referenceNarayanan et al. J.Biol.Chem. 291 1235 2016
sourceBacillus subtilis (strain 168) / Bacillus subtilis (strain 168)
experimentX-ray (resolution=2.07, R-factor=0.200)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyBacterial regulatory proteins, gntR family;
multimeric complexes4egy_AB 4egz_AB 4h0e_AB 5d4r_AB 5d4s_AB
reference complex4h0e_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureESRHRQ

Estimated binding specificities ?

readout + contactlogo
# IC=6.672 IC/col=0.953 n_of_columns=7 specificity:   
A |   0   0   9  67   0   0  67
C |  96   0   9   9  96   0   9
G |   0  96   9  11   0   0  11
T |   0   0  69   9   0  96   9
scan!

home
updated Thu Sep 12 21:04:45 2024