interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE OVEROXIDIZED ABFR BOUND TO DNA
(MarR family transcriptional regulator)
referenceYang et al. 'J. 139 1598 2017
sourceStaphylococcus epidermidis
experimentX-ray (resolution=3.00, R-factor=0.226)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyMarR family;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSNTTR

Estimated binding specificities ?

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# IC=7.507 IC/col=0.834 n_of_columns=9 specificity:   
A |   7   7  24  73  88   0   0   0   7
C |  73   1  24   7   0   8  96   0  73
G |   7   0  24   9   8   0   0  96   9
T |   9  88  24   7   0  88   0   0   7
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updated Tue Dec 17 01:51:39 2024