| structure name | HOMO SAPIENS CCCTC-BINDING FACTOR (CTCF) ZNF4-7 AND DNA COMPLEX STRUCTURE (Transcriptional repressor CTCF) |
| reference | Hashimoto et al. 'Mol. 66 711 2017 |
| source | Homo sapiens |
| experiment | X-ray (resolution=3.11, R-factor=0.239) |
| structural superfamily | beta-beta-alpha zinc fingers; |
| sequence family | Zinc finger, C2H2 type; |
| reference complex | 5k5i_A |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | ESKRDYKRQTRSDV |
Estimated binding specificities ?
| readout + contact |  |
A | 5 6 0 0 5 0 0 0 0 5 5 10 C | 80 10 96 96 90 96 96 0 0 81 65 5 G | 6 70 0 0 0 0 0 0 96 0 1 75 T | 5 10 0 0 1 0 0 96 0 10 25 6scan! |
Dendrogram of similar interfaces ?
matrix format--ECSGKGRG--DGYCKGRG--QA----TC------RASCDCVT L +-------5k5h_A +----1 NGKTWTKG------HTHGRGTGTT--ACNA--KGRG-------- L +-----------2 +-------1tf3_A ! ! ----------RGSTYGYC----QC--TGSTRGYT---------- +-3 +------------4is1_C ! ! ------------QA--TCRG--RG--YCRT-------------- L --4 +------------------------7txc_E ! ------------NTSTNAVT--QTSTSGKG--RG---------- L +-------------------------6u9q_A |
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updated Thu Sep 12 21:38:10 2024