structure name | TFIIIA FINGER 1-3 BOUND TO DNA, NMR, 22 STRUCTURES (TRANSCRIPTION FACTOR IIIA) |
source | XENOPUS LAEVIS |
experiment | NMR |
structural superfamily | beta-beta-alpha zinc fingers; |
sequence family | Zinc finger, C2H2 type; |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | NKWKHHRTTANKR |
Estimated binding specificities ?
readout + contact |
A | 15 4 4 8 0 0 0 96 0 21 0 C | 4 15 78 8 96 96 96 0 0 61 96 G | 21 8 10 2 0 0 0 0 0 10 0 T | 56 69 4 78 0 0 0 0 96 4 0scan! |
Dendrogram of similar interfaces ?
matrix formatNGKT--WTKG--------HTHGRGTGTT--ACNA--KGRG L +1tf3_A +-2 --KG--WTKA--------HCHGRG--TA--ACNA--KGRG L +----------3 +1tf6_A ! ! --RGSTDAHARG--RGSTDCHGTT--RG--DAEG--RG-- L +-5 +-5kl3_A ! ! ------------RGST--YGYC----QC--TGSTRGYT-- +-6 +------------4is1_C ! ! --EC----KGRG--LT--FCNA----QA--TTNA------ L +---7 +-------------1ubd_C ! ! --RA----NC------ATSGDCKG--DCPTSGSARTKG-- L ! ! +---------2gli_A ! +----4 --QA--TCNA----QAHTTT--QA--TTLAHGTCDTRG-- L +---8 ! +1g2d_F ! ! +---------1 --RG--DAQARG--RGSTDCHGTT--RG--DAEG--RG-- L ! ! +6b0o_A --9 ! --EC--SCKGRG----TCYCKARG--QA----TC------ ! +------------------5yeg_A ! --------YG----WT--WTSTET--FTVASGDCSART-- L +----------------------6a57_A |
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updated Fri Sep 13 16:02:14 2024