| structure name | THE CRYSTAL STRUCTURE OF THE SECOND Z-DNA BINDING DOMAIN OF HUMAN DAI (ZBP1) IN COMPLEX WITH Z-DNA (Z-DNA-binding protein 1) |
| reference | Kim et al. Proc.Natl.Acad.Sci.USA 105 20671 2008 |
| source | Homo sapiens |
| experiment | X-ray (resolution=1.45, R-factor=0.157) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| multimeric complexes | 3eyi_AB |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence |
No structural evidence for specific binding to DNA (<4 informative columns)
Dendrogram of similar interfaces ?
matrix format------------LT--NTHG--RT--YTPT------------RT-------- L +------------6qil_A +----6 --------------------NT----TA--------------RT-------- L ! ! +-------5zux_A +-----9 +----4 QA--------------------------------------NG---------- ! ! +-------7k63_U ! ! ----------RC------------------------------SG-------- +-13 +-----------------7cow_T ! ! ------------------RG----DTVT----STRG----WT---------- L ! ! +--------------6lxn_A +-15 +--------7 ----------------------------RC----YG--KT------------ ! ! +--------------2acj_B ! ! --------------------NTVC--ECSTYT--STYC--RA---------- L +-17 +-------------------------5ed4_A ! ! ------------------RCTT----TTHT--LA------------------ L ! ! +--------------------7e1b_B ! ! +---11 ----------ETNT--SCRGHC----RT------------QA---------- L +-18 +-16 +--------------------5d4s_B ! ! ! --LAHAKARA--------------------------------------IAVA ! ! +-------------------------6dta_A ! ! ----------------ST--PTTC--STQC------RA-------------- L ! +---------------------------1ddn_B ! ----------------------------------YGRG-------------- ! +4wcg_A +-19 +----2 ----------------STRGQTQA--ST----------HG----KT------ L ! ! +-------------3 +7t8k_B ! ! ! ! --------------------TTHT----KG----------RC---------- L ! ! +---10 +-----7b0c_A ! ! ! ! ----------RA----ST--ECTT--RAKA----------HT---------- L ! ! ! +-------------------7oz3_B ! ! ! ------------ET----RGTCTG--STRG----------------KT---- L ! +-14 +6q2b_B +-20 ! +--------------1 ------------NG--LTKTPTST--TT--------RT--------RT---- L ! ! ! +-----8 +7el3_B ! ! ! ! ! ----------------TT--PTTC--STNT---------------------- L ! ! +--12 +--------------4lln_I ! ! ! --------------STQTPTPG--TTRG------------HT---------- L -21 ! ! +-----------5xxp_A ! ! +--------5 --------------TC--KTTC--KGTCHT--ST------------------ L ! ! +-----------7ve5_B ! ! ------------YA--KTPTPG----YTRG---------------------- L ! +----------------------------4mtd_D ! --------------------KGTA----TA------RG-------------- L +----------------------------1xsd_A |
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updated Fri Sep 13 16:59:47 2024