| structure name | SOLUTION STRUCTURE OF THE BACILLUS LICHENIFORMIS BLAI MONOMERIC FORM IN COMPLEX WITH THE BLAP HALF-OPERATOR. (PENICILLINASE REPRESSOR) |
| source | BACILLUS LICHENIFORMIS |
| experiment | NMR |
| structural superfamily | "Winged helix" DNA-binding domain; |
| sequence family | Penicillinase repressor; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | TKTQTLRKFY |
Estimated binding specificities ?
readout + contact |  |
A | 54 0 0 0 96 96 13 C | 13 0 0 0 0 0 16 G | 13 0 96 0 0 0 13 T | 16 96 0 96 0 0 54scan! |
Dendrogram of similar interfaces ?
matrix format------------------KGTA----TA------RG---------------- L +----------------------------1xsd_A ! ----------LT--NTHG--RT--YTPT------------------RT---- L ! +----------6qil_A ! +---------1 ------------------------NAST--RGHT--STLT------------ L ! +-3 +----------7cby_C ! ! ! ----------LT--NTHGTA----YTRG----------------QA------ ! ! +--------------------2efw_A ! +-5 ----KAFA------------------------------------YANA--MC ! ! ! +-----------3aaf_B +-11 ! ! +--------2 ------------------------NAST--RGHTNTSTLT------------ L ! ! +-6 +-4 +-----------7fj2_B ! ! ! ! ! ------------------------NAST--RTHT--ST-------------- ! ! ! ! +--------------------3co7_C ! ! +-7 ! QA-------------------------------------------------- ! ! ! ! +-----------------------7k63_U ! ! +-8 ! --------RC------------------------------------------ +-12 ! ! ! +-------------------------7cow_T ! ! ! +-9 ! ------------------TTHT----KG--------------RC-------- L ! ! ! ! ! +-------------------------7b0c_A ! ! +-10 ! --------------ST--PTTC--STQC------RA---------------- L ! ! ! +---------------------------1ddn_B +-13 ! ! --------------QTPTPG--TTRG-------------------------- L ! ! ! +---------------------------5xxp_A ! ! ! ----------YA--KTPTPG----YTRG------------------------ L +-14 ! +----------------------------4mtd_D ! ! ! --------------TC--KTTC--KGTCHTST-------------------- L ! ! +----------------------------7ve5_B +-15 ! ------------RAST--ECTT--RAKA------------------------ ! ! +----------------------------7oz3_B +-16 ! ----------ET----RGTCTG--STRG--------------------KT-- L ! ! +-----------------------------6q2b_B +-17 ! --------------TT--PTTC--STNT------------------RT---- L ! ! +-----------------------------4lln_I +-18 ! ----------NG--LTKTPTST--TT--------RT------------RT-- L ! ! +-----------------------------7el3_B +-19 ! --RC------------------------------------------------ ! ! +-----------------------------6l9z_S +-20 ! ----------------RCTT----TTHT--LA-------------------- L ! ! +-----------------------------7e1b_B -21 ! --------------STRGQTQA--ST--------------HG----KT---- L ! +-----------------------------7t8k_B ! --------------SGRGPT----SGRG------------------------ L +-----------------------------7bhy_A |
home
updated Fri Sep 13 16:35:35 2024